Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SARLGA251_RS08045 Genome accession   NC_017349
Coordinates   1649427..1650113 (-) Length   228 a.a.
NCBI ID   WP_078064626.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus LGA251     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1644427..1655113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SARLGA251_RS08025 (SARLGA251_14910) rpsT 1645341..1645592 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SARLGA251_RS08030 (SARLGA251_14920) holA 1645637..1646611 (-) 975 WP_001282572.1 DNA polymerase III subunit delta -
  SARLGA251_RS08035 (SARLGA251_14930) comEC 1646668..1648869 (-) 2202 WP_041201403.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SARLGA251_RS08040 (SARLGA251_14940) - 1648874..1649335 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SARLGA251_RS08045 (SARLGA251_14950) comEA 1649427..1650113 (-) 687 WP_078064626.1 ComEA family DNA-binding protein Machinery gene
  SARLGA251_RS08050 (SARLGA251_14960) - 1650153..1650869 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  SARLGA251_RS08055 (SARLGA251_14970) rsfS 1650872..1651225 (-) 354 WP_001088019.1 ribosome silencing factor -
  SARLGA251_RS08060 (SARLGA251_14980) yqeK 1651226..1651810 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SARLGA251_RS08065 (SARLGA251_14990) nadD 1651800..1652369 (-) 570 WP_000725161.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SARLGA251_RS08070 (SARLGA251_15000) yhbY 1652372..1652662 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  SARLGA251_RS08075 (SARLGA251_15010) aroE 1652666..1653472 (-) 807 WP_000666747.1 shikimate dehydrogenase -
  SARLGA251_RS08080 (SARLGA251_15020) yqeH 1653486..1654586 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25748.41 Da        Isoelectric Point: 9.5275

>NTDB_id=46606 SARLGA251_RS08045 WP_078064626.1 1649427..1650113(-) (comEA) [Staphylococcus aureus subsp. aureus LGA251]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLSDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVDLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=46606 SARLGA251_RS08045 WP_078064626.1 1649427..1650113(-) (comEA) [Staphylococcus aureus subsp. aureus LGA251]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCCGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGAAACACAAATAATACTAAAGTAGATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

97.797

99.561

0.974

Multiple sequence alignment