Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HXV88_RS02065 Genome accession   NZ_CP058912
Coordinates   418608..419849 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain JC529     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413608..424849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXV88_RS02040 (HXV88_02040) mutT 415600..416004 (+) 405 WP_179903026.1 8-oxo-dGTP diphosphatase MutT -
  HXV88_RS02045 (HXV88_02045) yacG 416082..416276 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  HXV88_RS02050 (HXV88_02050) zapD 416286..417008 (-) 723 WP_179903027.1 cell division protein ZapD -
  HXV88_RS02055 (HXV88_02055) coaE 417046..417660 (-) 615 WP_179903028.1 dephospho-CoA kinase -
  HXV88_RS02060 (HXV88_02060) pilD 417674..418546 (-) 873 WP_179903029.1 A24 family peptidase Machinery gene
  HXV88_RS02065 (HXV88_02065) pilC 418608..419849 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  HXV88_RS02070 (HXV88_02070) pilB 420090..421796 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  HXV88_RS02075 (HXV88_02075) - 421800..422228 (-) 429 WP_115544754.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HXV88_RS02080 (HXV88_02080) nadC 422544..423407 (-) 864 WP_179903030.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HXV88_RS02085 (HXV88_02085) - 423411..423881 (-) 471 WP_005336129.1 TIGR02281 family clan AA aspartic protease -
  HXV88_RS02090 (HXV88_02090) ampD 424012..424587 (+) 576 WP_179903031.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=465949 HXV88_RS02065 WP_005336136.1 418608..419849(-) (pilC) [Aeromonas veronii strain JC529]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=465949 HXV88_RS02065 WP_005336136.1 418608..419849(-) (pilC) [Aeromonas veronii strain JC529]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTTAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAATCCCAAGGGCTCTTCTCCAAGGGAGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCCGGTGTACCGCTGGTACAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGTACCCCCATGTCGGAGGCGCTGCGCCGCCATCCCC
TCTACTTTGACGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGGGCACTGGAGACCATCTACGACCGTATC
GCCACTTACCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCAATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACCGCC
CTTGGTATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTAAAAGACAACACCGACAAGTTTGTACTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCCCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCGCTTATTTCGGCGGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCGATCCGC
AATGAAGTGGTGGCAGGCATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGTATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368