Detailed information NTG0465948

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HXV88_RS02060
• Genome accession: NZ_CP058912
• Coordinates: 417674..418546 (-)
• Length: 290 a.a.
• NCBI ID: WP_179903029.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain JC529
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 412674..423546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HXV88_RS02035 (HXV88_02035)	secA	412805..415525 (+)	2721	WP_179903025.1	preprotein translocase subunit SecA	-
HXV88_RS02040 (HXV88_02040)	mutT	415600..416004 (+)	405	WP_179903026.1	8-oxo-dGTP diphosphatase MutT	-
HXV88_RS02045 (HXV88_02045)	yacG	416082..416276 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
HXV88_RS02050 (HXV88_02050)	zapD	416286..417008 (-)	723	WP_179903027.1	cell division protein ZapD	-
HXV88_RS02055 (HXV88_02055)	coaE	417046..417660 (-)	615	WP_179903028.1	dephospho-CoA kinase	-
HXV88_RS02060 (HXV88_02060)	pilD	417674..418546 (-)	873	WP_179903029.1	A24 family peptidase	Machinery gene
HXV88_RS02065 (HXV88_02065)	pilC	418608..419849 (-)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
HXV88_RS02070 (HXV88_02070)	pilB	420090..421796 (-)	1707	WP_005336134.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HXV88_RS02075 (HXV88_02075)	-	421800..422228 (-)	429	WP_115544754.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HXV88_RS02080 (HXV88_02080)	nadC	422544..423407 (-)	864	WP_179903030.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32122.33 Da
• Isoelectric Point: 6.4856

>NTDB_id=465948 HXV88_RS02060 WP_179903029.1 417674..418546(-) (pilD) [Aeromonas veronii strain JC529]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFSTDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLASGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITHWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=465948 HXV88_RS02060 WP_179903029.1 417674..418546(-) (pilD) [Aeromonas veronii strain JC529]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTATTTTTCGCTGGTTTTTCTTTTCTCCTTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCACGGCTACTTTT
CCACCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGTCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTAGCAATGGTCATAACACCGGGCTGGGGCA
CACTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTCATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAAGTGGCTTCGTACCGCTGGCGGATGCCGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTAGCGGCGCTGGGTGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGTTGCTATGGGGCGATACCATCACCCACTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.627	98.966	0.6
pilD	Vibrio campbellii strain DS40M4	56.098	98.966	0.555
pilD	Acinetobacter baumannii D1279779	53.237	95.862	0.51
pilD	Acinetobacter nosocomialis M2	53.237	95.862	0.51
pilD	Neisseria gonorrhoeae MS11	48.913	95.172	0.466