Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   SSU1300283_RS10110 Genome accession   NZ_CP058741
Coordinates   2088493..2088888 (-) Length   131 a.a.
NCBI ID   WP_002936524.1    Uniprot ID   -
Organism   Streptococcus suis strain 13-00283-02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2089874..2091163 2088493..2088888 flank 986


Gene organization within MGE regions


Location: 2088493..2091163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS10110 (SSU1300283_02052) ssbB 2088493..2088888 (-) 396 WP_002936524.1 single-stranded DNA-binding protein Machinery gene
  SSU1300283_RS10115 (SSU1300283_02053) - 2088943..2089722 (+) 780 WP_002936525.1 DUF2785 domain-containing protein -
  SSU1300283_RS10120 (SSU1300283_02054) - 2089874..2091163 (-) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14876.76 Da        Isoelectric Point: 5.0026

>NTDB_id=465207 SSU1300283_RS10110 WP_002936524.1 2088493..2088888(-) (ssbB) [Streptococcus suis strain 13-00283-02]
MYNKVILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGNKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNAGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=465207 SSU1300283_RS10110 WP_002936524.1 2088493..2088888(-) (ssbB) [Streptococcus suis strain 13-00283-02]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTTACTGTCGCAGTCAACCGCCGTTTTAAGACGGAAAATGGCGAACGTGAAGCAGATTTTCTTAATGTCATTTTCT
GGGGCAAACTGGCGGAAACGCTTGTTTCCTATGGTAATAAAGGTAGTCTAATTTCCATTGATGGTGAATTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAAATCTTAGGACAATCCTTCCAGCTGCTCGAAAGTCGGGCCCA
ACGTGCTATGCGTGAAAATAATGCTGGCGATGATCTAGCTGATTTGGTCTTAGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae R6

73.282

100

0.733
  ssbB/cilA Streptococcus mitis SK321

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae D39

73.282

100

0.733
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389