Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   HMPREF0772_RS08585 Genome accession   NC_017342
Coordinates   1696027..1696326 (+) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus subsp. aureus TCH60     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1691027..1701326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0772_RS08545 (HMPREF0772_11593) - 1691088..1691291 (+) 204 WP_000087561.1 YqgQ family protein -
  HMPREF0772_RS08550 (HMPREF0772_11594) - 1691288..1692274 (+) 987 WP_000161314.1 ROK family glucokinase -
  HMPREF0772_RS08555 (HMPREF0772_11595) - 1692274..1692603 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  HMPREF0772_RS08560 (HMPREF0772_11596) - 1692600..1693223 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  HMPREF0772_RS08565 (HMPREF0772_11597) comGA 1693275..1694249 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  HMPREF0772_RS08570 (HMPREF0772_11598) comGB 1694221..1695291 (+) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  HMPREF0772_RS08575 (HMPREF0772_11599) comGC 1695305..1695616 (+) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  HMPREF0772_RS08580 (HMPREF0772_11600) comGD 1695594..1696040 (+) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  HMPREF0772_RS08585 (HMPREF0772_11601) comGE 1696027..1696326 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  HMPREF0772_RS08590 (HMPREF0772_11602) comGF 1696244..1696741 (+) 498 WP_001799534.1 competence type IV pilus minor pilin ComGF Machinery gene
  HMPREF0772_RS08595 - 1696838..1696984 (+) 147 WP_001789879.1 hypothetical protein -
  HMPREF0772_RS08600 (HMPREF0772_11603) - 1696974..1697498 (+) 525 WP_001015125.1 shikimate kinase -
  HMPREF0772_RS08605 (HMPREF0772_11604) gcvT 1697657..1698748 (+) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  HMPREF0772_RS08610 (HMPREF0772_11605) gcvPA 1698768..1700114 (+) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=46478 HMPREF0772_RS08585 WP_000844413.1 1696027..1696326(+) (comGE) [Staphylococcus aureus subsp. aureus TCH60]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=46478 HMPREF0772_RS08585 WP_000844413.1 1696027..1696326(+) (comGE) [Staphylococcus aureus subsp. aureus TCH60]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTTATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAATATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99

Multiple sequence alignment