Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HYE74_RS15795 Genome accession   NZ_CP058594
Coordinates   3321634..3321993 (+) Length   119 a.a.
NCBI ID   WP_026683911.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain ASRS217     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3316634..3326993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYE74_RS15785 - 3318085..3320886 (+) 2802 WP_014096782.1 DEAD/DEAH box helicase -
  HYE74_RS15790 - 3320905..3321327 (-) 423 WP_014096780.1 YwpF-like family protein -
  HYE74_RS15795 ssbB 3321634..3321993 (+) 360 WP_026683911.1 single-stranded DNA-binding protein Machinery gene
  HYE74_RS15800 - 3322000..3322164 (+) 165 WP_179234771.1 hypothetical protein -
  HYE74_RS15805 fabZ 3322352..3322777 (-) 426 WP_104851680.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HYE74_RS15810 - 3322905..3323735 (-) 831 WP_104851681.1 flagellar hook-basal body protein -
  HYE74_RS15815 - 3323763..3324551 (-) 789 WP_014096776.1 flagellar hook-basal body protein -
  HYE74_RS15820 - 3324590..3325591 (-) 1002 WP_014096775.1 rod shape-determining protein -
  HYE74_RS15825 spoIIID 3325981..3326247 (-) 267 WP_014096774.1 sporulation transcriptional regulator SpoIIID -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13441.33 Da        Isoelectric Point: 9.9022

>NTDB_id=464487 HYE74_RS15795 WP_026683911.1 3321634..3321993(+) (ssbB) [Heyndrickxia coagulans strain ASRS217]
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKDGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG

Nucleotide


Download         Length: 360 bp        

>NTDB_id=464487 HYE74_RS15795 WP_026683911.1 3321634..3321993(+) (ssbB) [Heyndrickxia coagulans strain ASRS217]
TTGATTAACCAGGTCACATTAGTCGGAAGGCTTACAAAAGATCCGGATCTTCACTACACGGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGCCGGATTCAGACCCGC
CATTATGATAATAAAGACGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
AGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.909

92.437

0.563
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.83

89.076

0.471
  ssb Latilactobacillus sakei subsp. sakei 23K

46.552

97.479

0.454
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.241

97.479

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

42.593

90.756

0.387
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.593

90.756

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

41.667

90.756

0.378
  ssbB/cilA Streptococcus pneumoniae D39

41.667

90.756

0.378
  ssbB/cilA Streptococcus pneumoniae R6

41.667

90.756

0.378
  ssbB/cilA Streptococcus mitis SK321

41.667

90.756

0.378
  ssbA Streptococcus mutans UA159

41.667

90.756

0.378