Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CQZ96_RS12075 Genome accession   NZ_CP058272
Coordinates   2587066..2588298 (+) Length   410 a.a.
NCBI ID   WP_105714637.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2582066..2593298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS12035 (CQZ96_012065) rimP 2582584..2583108 (-) 525 WP_004718339.1 ribosome maturation factor RimP -
  CQZ96_RS12060 (CQZ96_012090) secG 2583900..2584241 (-) 342 WP_034613616.1 preprotein translocase subunit SecG -
  CQZ96_RS12065 (CQZ96_012095) tpiA 2584251..2585045 (-) 795 WP_105714639.1 triose-phosphate isomerase -
  CQZ96_RS12070 (CQZ96_012100) pilB 2585323..2587038 (+) 1716 WP_105714638.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CQZ96_RS12075 (CQZ96_012105) pilC 2587066..2588298 (+) 1233 WP_105714637.1 type II secretion system F family protein Machinery gene
  CQZ96_RS12080 (CQZ96_012110) pilD 2588301..2589182 (+) 882 WP_171287958.1 prepilin peptidase Machinery gene
  CQZ96_RS12085 (CQZ96_012115) coaE 2589209..2589808 (+) 600 WP_105714636.1 dephospho-CoA kinase -
  CQZ96_RS12090 (CQZ96_012120) - 2589877..2590788 (-) 912 WP_105714635.1 DMT family transporter -
  CQZ96_RS12095 (CQZ96_012125) rlmB 2590827..2591582 (-) 756 WP_105714634.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CQZ96_RS12100 (CQZ96_012130) - 2591743..2592066 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45158.64 Da        Isoelectric Point: 9.8567

>NTDB_id=463353 CQZ96_RS12075 WP_105714637.1 2587066..2588298(+) (pilC) [Acinetobacter sp. MYb10]
MAAKKAQMMPTFAYDGVDRKGIKVKGELPSRNMALAKVTLRKQGITIKTIREKRKNILEGLMKKGISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREIVLGIKSEVEGGNTFAGALRKYPRYFDSLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSDWMQKYWFVFLLIVGMLIA
AFLETKKRSKKFQDFLDRTVLKLPIIGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIREDVA
TGQQLNFAMRATNKFPAMAIQMVAIGEESGALDAMLDKVASHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVVGG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=463353 CQZ96_RS12075 WP_105714637.1 2587066..2588298(+) (pilC) [Acinetobacter sp. MYb10]
ATGGCAGCTAAAAAAGCTCAAATGATGCCTACATTTGCTTATGACGGGGTTGATCGTAAAGGGATCAAGGTCAAAGGGGA
ACTACCTTCACGTAATATGGCGCTTGCCAAAGTCACCCTACGTAAACAAGGCATTACCATTAAAACCATTCGAGAAAAAA
GGAAAAATATTCTTGAAGGTTTAATGAAAAAAGGCATTTCCACTTTAGATATTACTATTTTCACACGACAACTCGCCACA
ATGATGAAAGCAGGTGTGCCTTTAGTACAAAGCTTTGAAATCGTTGCAGAAGGACTAGAAAATCCCTCAATGCGTGAAAT
TGTACTCGGGATTAAAAGTGAGGTTGAAGGGGGAAATACATTTGCAGGTGCATTAAGAAAATATCCACGCTATTTTGACA
GCTTATTTTGTTCATTGGTCGAATCTGGGGAACAATCAGGTGCATTAGAAACCATGTTAGATCGGGTAGCGATCTATAAA
GAAAAAAGTGAATTGCTGAAACAAAAAATTAAAAAAGCCATGAAATATCCAATTTCTGTAATTGTGGTTGCAGTGATTGT
TACCATTATTCTAATGGTAAAAGTGGTGCCTGTCTTTCAGGATTTGTTTAGCTCTTTTGGTGCTGACCTTCCCGCATTTA
CTCAAATGGTAGTGAATATGTCTGATTGGATGCAAAAATATTGGTTTGTATTTTTATTGATTGTTGGGATGCTTATAGCT
GCATTTCTAGAAACAAAAAAACGCAGTAAAAAATTCCAAGATTTTCTAGACCGAACAGTACTTAAGTTACCCATTATTGG
TGATCTGGTTTATAAAGCCATTATTGCCCGTTATAGCCGTACACTGGCTACAACTTTTGCAGCAGGTGTGCCACTCATCG
AAGCTTTAGAATCCACAGCTGGTGCAACCAATAATGTGGTTTATGAACAAGCTGTAATGAAAATCCGTGAAGATGTTGCG
ACTGGACAGCAACTTAACTTTGCCATGCGTGCAACCAATAAGTTCCCTGCTATGGCCATTCAAATGGTGGCAATTGGTGA
AGAATCGGGTGCATTGGATGCGATGTTAGATAAAGTTGCGTCACATTTTGAAAATGAAGTTGACAATGCTGTGGATGGCT
TAACTTCAATGATGGAGCCTTTAATTATGGCGATATTAGGTGTACTTGTGGGTGGCCTAGTGATTGCGATGTATCTGCCT
ATATTCCAAATGGGTTCAGTGGTTGGTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

86.029

99.512

0.856
  pilC Acinetobacter baylyi ADP1

83.333

99.512

0.829
  pilC Pseudomonas stutzeri DSM 10701

60.099

99.024

0.595
  pilC Legionella pneumophila strain ERS1305867

53.827

98.78

0.532
  pilG Neisseria meningitidis 44/76-A

46.617

97.317

0.454
  pilG Neisseria gonorrhoeae MS11

46.617

97.317

0.454
  pilC Vibrio cholerae strain A1552

42.157

99.512

0.42
  pilC Vibrio campbellii strain DS40M4

41.32

99.756

0.412
  pilC Thermus thermophilus HB27

37.905

97.805

0.371