Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CQZ96_RS12080 Genome accession   NZ_CP058272
Coordinates   2588301..2589182 (+) Length   293 a.a.
NCBI ID   WP_171287958.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2583301..2594182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS12060 (CQZ96_012090) secG 2583900..2584241 (-) 342 WP_034613616.1 preprotein translocase subunit SecG -
  CQZ96_RS12065 (CQZ96_012095) tpiA 2584251..2585045 (-) 795 WP_105714639.1 triose-phosphate isomerase -
  CQZ96_RS12070 (CQZ96_012100) pilB 2585323..2587038 (+) 1716 WP_105714638.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CQZ96_RS12075 (CQZ96_012105) pilC 2587066..2588298 (+) 1233 WP_105714637.1 type II secretion system F family protein Machinery gene
  CQZ96_RS12080 (CQZ96_012110) pilD 2588301..2589182 (+) 882 WP_171287958.1 prepilin peptidase Machinery gene
  CQZ96_RS12085 (CQZ96_012115) coaE 2589209..2589808 (+) 600 WP_105714636.1 dephospho-CoA kinase -
  CQZ96_RS12090 (CQZ96_012120) - 2589877..2590788 (-) 912 WP_105714635.1 DMT family transporter -
  CQZ96_RS12095 (CQZ96_012125) rlmB 2590827..2591582 (-) 756 WP_105714634.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CQZ96_RS12100 (CQZ96_012130) - 2591743..2592066 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32780.21 Da        Isoelectric Point: 7.8086

>NTDB_id=463354 CQZ96_RS12080 WP_171287958.1 2588301..2589182(+) (pilD) [Acinetobacter sp. MYb10]
MNMFNDLLNFLIQSPTALYLTVGVLGLCVGSFLNVVIYRTPKMMEKEWRQEWHTECQLLAGSQQIVIDEEKLSLSQPAST
CPKCKTPIRWYQNIPIISWLALRGKCASCQNPISIRYPFVELLTAVCSLTVLAVYGPTLEMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAIGLGINSFHLYTTASAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENVPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=463354 CQZ96_RS12080 WP_171287958.1 2588301..2589182(+) (pilD) [Acinetobacter sp. MYb10]
ATGAATATGTTCAATGATTTGTTAAATTTCCTTATTCAATCACCAACAGCACTCTATTTGACAGTTGGTGTTTTAGGGCT
ATGCGTTGGTAGTTTTTTAAATGTGGTGATTTATCGCACCCCCAAGATGATGGAAAAAGAATGGCGACAGGAATGGCATA
CAGAATGCCAACTACTGGCAGGCTCACAACAGATTGTGATTGATGAAGAGAAACTCAGCCTGAGTCAACCAGCCTCTACC
TGTCCCAAATGCAAAACTCCAATTCGTTGGTATCAAAATATCCCCATTATCAGTTGGTTGGCTTTAAGAGGCAAATGCGC
TTCGTGTCAAAACCCGATTAGCATCCGTTATCCATTTGTTGAGCTTTTAACTGCAGTGTGTTCATTAACAGTGCTTGCTG
TTTATGGCCCTACTTTAGAAATGGTTTTTGGTGTGCTACTGACTTGGGTACTGATTACACTTACATTTATTGATTTTGAC
ACTCAGTTACTTCCAGACCGCTTTACCTTAACCTTGGCGGCAATAGGTTTAGGCATTAACTCATTTCATTTATATACAAC
AGCAAGTGCTGCAATTTGGGGGTATATTATTGGTTTCCTATGTCTTTGGATTGTCTACTATCTATTTAAAATAGTGACAG
GCAAAGAAGGCATGGGCTATGGTGACTTTAAGCTACTTGCTGCACTTGGCGCGTGGATGGGGCCATTGATGTTACCGTTA
ATTATCCTACTGTCTTCTGTGGTGGGTGCGATCATTGGTATTATTTTACTTAAGATTCGTAAAGAAAATGTCCCTTTTGC
CTTTGGTCCTTATATTGCAATTGCAGGATGGATTGCGTTTTTATGGGGTGAGCAAATTATGAAAGTATATTTGGGTCAAT
AA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(146-254)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

72.917

98.294

0.717
  pilD Acinetobacter baumannii D1279779

72.569

98.294

0.713
  pilD Vibrio cholerae strain A1552

53.676

92.833

0.498
  pilD Vibrio campbellii strain DS40M4

53.506

92.491

0.495
  pilD Neisseria gonorrhoeae MS11

45.907

95.904

0.44