Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   HW271_RS07040 Genome accession   NZ_CP058258
Coordinates   1439687..1440082 (-) Length   131 a.a.
NCBI ID   WP_004251844.1    Uniprot ID   -
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1434687..1445082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS07020 (HW271_07020) - 1435213..1436511 (-) 1299 WP_006150426.1 ABC transporter substrate-binding protein -
  HW271_RS07025 (HW271_07025) - 1436508..1437191 (-) 684 WP_004251853.1 response regulator transcription factor -
  HW271_RS07030 (HW271_07030) - 1437198..1438514 (-) 1317 WP_004251849.1 sensor histidine kinase -
  HW271_RS07035 (HW271_07035) - 1438514..1439497 (-) 984 WP_004251845.1 substrate-binding domain-containing protein -
  HW271_RS07040 (HW271_07040) ssbB/cilA 1439687..1440082 (-) 396 WP_004251844.1 single-stranded DNA-binding protein Machinery gene
  HW271_RS07045 (HW271_07045) - 1440158..1440919 (-) 762 WP_178895418.1 SDR family NAD(P)-dependent oxidoreductase -
  HW271_RS07050 (HW271_07050) ytpR 1440961..1441587 (-) 627 WP_178895419.1 YtpR family tRNA-binding protein -
  HW271_RS07055 (HW271_07055) - 1441596..1441913 (-) 318 WP_178895420.1 thioredoxin family protein -
  HW271_RS07060 (HW271_07060) - 1441910..1442200 (-) 291 WP_178895421.1 DUF4651 domain-containing protein -
  HW271_RS07065 (HW271_07065) - 1442436..1442690 (-) 255 WP_004251830.1 DUF1912 family protein -
  HW271_RS07070 (HW271_07070) - 1442700..1444034 (-) 1335 WP_178895422.1 DUF438 domain-containing protein -
  HW271_RS07075 (HW271_07075) - 1444034..1444267 (-) 234 WP_000368742.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14805.74 Da        Isoelectric Point: 5.9409

>NTDB_id=463237 HW271_RS07040 WP_004251844.1 1439687..1440082(-) (ssbB/cilA) [Streptococcus sp. oral taxon 061 strain F0704]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAINRRFKDQNGEREADFINIVVWGKLAETLASYATKGSLISIDGELRTR
KFEKNGQTNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=463237 HW271_RS07040 WP_004251844.1 1439687..1440082(-) (ssbB/cilA) [Streptococcus sp. oral taxon 061 strain F0704]
ATGTATAATAAAGTGATTATGATTGGACGCTTGACGTCTACACCCGAATTGCACAAAACCAACAATGATAAGTCTGTAGC
TCGTGCGACGATTGCTATTAACCGTCGTTTTAAGGACCAAAATGGGGAACGTGAAGCGGACTTCATCAATATTGTTGTCT
GGGGGAAATTGGCTGAAACCTTGGCTAGCTACGCGACTAAAGGCAGTCTCATTTCTATCGATGGGGAACTTCGTACCCGT
AAGTTCGAGAAGAATGGTCAGACCAACTACGTGACCGAAGTTCTTGCTACAGGATTTCAACTTTTGGAAAGTCGCGCCCA
ACGTGCTATGCGTGAAAATAATGCTGGTCAAGACTTAGCAGATCTGGTTTTGGAAGAGGAGGAACTTCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

92.366

100

0.924
  ssbB/cilA Streptococcus pneumoniae Rx1

92.366

100

0.924
  ssbB/cilA Streptococcus pneumoniae D39

92.366

100

0.924
  ssbB/cilA Streptococcus pneumoniae R6

92.366

100

0.924
  ssbB/cilA Streptococcus pneumoniae TIGR4

91.603

100

0.916
  ssbB/cilA Streptococcus mitis SK321

90.84

100

0.908
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405