Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SAOV_RS05595 Genome accession   NC_017337
Coordinates   1115655..1116080 (+) Length   141 a.a.
NCBI ID   WP_000934776.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ED133     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1110655..1121080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOV_RS05535 (SAOV_1075) - 1111466..1111705 (+) 240 WP_000548577.1 helix-turn-helix transcriptional regulator -
  SAOV_RS05540 (SAOV_1076) - 1111718..1112161 (+) 444 WP_000435360.1 hypothetical protein -
  SAOV_RS05545 - 1112176..1112316 (+) 141 WP_000939495.1 hypothetical protein -
  SAOV_RS05550 - 1112309..1112518 (-) 210 WP_000772137.1 hypothetical protein -
  SAOV_RS05555 (SAOV_1077) - 1112575..1113288 (+) 714 WP_001157024.1 phage repressor protein -
  SAOV_RS05560 - 1113452..1113682 (-) 231 WP_000395456.1 hypothetical protein -
  SAOV_RS05565 - 1113754..1113975 (+) 222 WP_000594788.1 hypothetical protein -
  SAOV_RS05570 (SAOV_1078) - 1113968..1114135 (+) 168 WP_000048122.1 DUF1270 domain-containing protein -
  SAOV_RS05575 - 1114136..1114456 (+) 321 WP_000219663.1 hypothetical protein -
  SAOV_RS05580 (SAOV_1079) - 1114548..1114808 (+) 261 WP_000291083.1 DUF1108 family protein -
  SAOV_RS05585 (SAOV_1080) - 1114818..1115039 (+) 222 WP_001077279.1 DUF2483 family protein -
  SAOV_RS05590 - 1115032..1115655 (+) 624 WP_000139724.1 DUF1071 domain-containing protein -
  SAOV_RS05595 (SAOV_1081) ssbA 1115655..1116080 (+) 426 WP_000934776.1 single-stranded DNA-binding protein Machinery gene
  SAOV_RS05600 - 1116094..1116768 (+) 675 WP_001121812.1 putative HNHc nuclease -
  SAOV_RS05605 (SAOV_1082) - 1116761..1117513 (+) 753 WP_001037660.1 DnaD domain protein -
  SAOV_RS05610 - 1117513..1117869 (+) 357 WP_001132243.1 hypothetical protein -
  SAOV_RS05615 (SAOV_1083) - 1117866..1119107 (+) 1242 WP_001106164.1 DnaB helicase C-terminal domain-containing protein -
  SAOV_RS05620 (SAOV_1084) - 1119104..1119319 (+) 216 WP_001024399.1 hypothetical protein -
  SAOV_RS05625 - 1119322..1119543 (+) 222 WP_001123686.1 DUF3269 family protein -
  SAOV_RS05630 (SAOV_1085) - 1119554..1119958 (+) 405 WP_000049785.1 DUF1064 domain-containing protein -
  SAOV_RS05635 - 1119963..1120148 (+) 186 Protein_1090 DUF3113 family protein -
  SAOV_RS05640 (SAOV_1086) - 1120149..1120520 (+) 372 WP_000248289.1 SA1788 family PVL leukocidin-associated protein -
  SAOV_RS05645 (SAOV_1087) - 1120521..1120769 (+) 249 WP_001124144.1 phi PVL orf 51-like protein -
  SAOV_RS05650 (SAOV_1088) - 1120783..1121031 (+) 249 WP_000693997.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15867.52 Da        Isoelectric Point: 8.4724

>NTDB_id=46286 SAOV_RS05595 WP_000934776.1 1115655..1116080(+) (ssbA) [Staphylococcus aureus subsp. aureus ED133]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKDGKRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTEADFSDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=46286 SAOV_RS05595 WP_000934776.1 1115655..1116080(+) (ssbA) [Staphylococcus aureus subsp. aureus ED133]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGC
AGTTACGATAACAAAGACGGGAAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAG
CAGACTTTTCTGACTTACCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.881

83.688

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

52.632

100

0.567
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.957

81.56

0.383
  ssbA Streptococcus mutans UA159

46.957

81.56

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae Rx1

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae D39

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae R6

43.22

83.688

0.362
  ssbB/cilA Streptococcus mitis SK321

43.22

83.688

0.362

Multiple sequence alignment