NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	JHW37_RS00105	Genome accession	NZ_CP068238
Coordinates	21867..22955 (+)	Length	362 a.a.
NCBI ID	WP_054080537.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain A39-1
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 16867..27955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHW37_RS00085 (JHW37_00085)	rsmB	17764..19068 (-)	1305	WP_053816455.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
JHW37_RS00090 (JHW37_00090)	fmt	19065..20009 (-)	945	WP_043099675.1	methionyl-tRNA formyltransferase	-
JHW37_RS00095 (JHW37_00095)	def	20062..20568 (-)	507	WP_011979050.1	peptide deformylase	-
JHW37_RS00100 (JHW37_00100)	tsaP	20707..21732 (+)	1026	WP_043099678.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
JHW37_RS00105 (JHW37_00105)	dprA	21867..22955 (+)	1089	WP_054080537.1	DNA-processing protein DprA	Machinery gene
JHW37_RS00110 (JHW37_00110)	-	22995..23552 (+)	558	WP_043099682.1	L-threonylcarbamoyladenylate synthase	-
JHW37_RS00115 (JHW37_00115)	-	23563..24540 (-)	978	WP_043099683.1	quinone oxidoreductase family protein	-
JHW37_RS00120 (JHW37_00120)	hemF	24732..25649 (+)	918	WP_011979055.1	oxygen-dependent coproporphyrinogen oxidase	-
JHW37_RS00125 (JHW37_00125)	aroE	25707..26531 (+)	825	WP_003156232.1	shikimate dehydrogenase	-
JHW37_RS00130 (JHW37_00130)	-	26643..27629 (+)	987	WP_011979056.1	phospholipase	-

Sequence

Protein

Download Length: 362 a.a. Molecular weight: 37693.21 Da Isoelectric Point: 7.0290

                                >NTDB_id=459191 JHW37_RS00105 WP_054080537.1 21867..22955(+) (dprA) [Pseudomonas aeruginosa strain A39-1]

MNNLSPAELDARLRLHGLPELGPIRFLRLIEAFGSASSALAAPAGAWRTLGLPAEAAAARRSAEVRERAADALRWLEAPR

RHLLMWDDPAYPALLGEVSDAPPLLFVEGAPTALERPQLAMVGSRRASPAGLGSARSFARSLARGGFAITSGLALGIDGA

AHEGALEVGGVTLAVLGTGLRTLYPRRHAALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS

GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVEHVLEALRGWTQAGPAEAPVASLAHPLLELLRAAP

YSSEGLAAASGWALPEVLAALTELELDGRVACEAGTWVHRSG

Nucleotide

Download Length: 1089 bp

                                >NTDB_id=459191 JHW37_RS00105 WP_054080537.1 21867..22955(+) (dprA) [Pseudomonas aeruginosa strain A39-1]

ATGAACAACCTTTCCCCCGCCGAGCTGGACGCCCGGCTGCGCCTGCATGGCCTGCCCGAACTGGGGCCGATCCGCTTCCT

GCGCCTGATCGAGGCCTTCGGCTCGGCCTCCTCCGCCCTCGCCGCGCCGGCTGGCGCCTGGCGCACCCTGGGGCTGCCCG

CCGAGGCCGCCGCTGCCAGGCGCAGCGCCGAGGTGCGCGAGCGGGCGGCGGATGCCCTGCGCTGGCTCGAAGCGCCGCGC

CGGCACCTGCTGATGTGGGATGATCCGGCCTACCCCGCGCTGCTCGGCGAGGTGAGCGACGCCCCGCCGCTGCTGTTCGT

CGAAGGCGCACCGACGGCGCTCGAAAGGCCGCAGCTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGCCTGGGCA

GCGCACGGAGTTTCGCGCGCAGCCTGGCACGAGGCGGCTTCGCCATCACCAGCGGACTGGCGCTGGGCATCGACGGCGCC

GCCCATGAAGGCGCGCTGGAGGTCGGCGGCGTGACCCTGGCGGTGCTCGGCACCGGCCTGCGCACCCTCTATCCGCGTCG

CCACGCGGCGCTGGCGCGGCGTATCGTCGAGGGCGGCGGCGCGCTGGTCTCGGAGTTGCCGCTGGACAGTCCGCCGCTAC

CCGCCAACTTTCCCCGGCGCAACCGGATCATCAGCGGCCTCTCGCTGGGCGTGCTGGTGGTCGAGGCGAGCCCCGCCAGC

GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGCCGCGAGGTCTATGCCATCCCCGGTTCGATCCACCATCCGGG

CGCGCGTGGCTGCCATCAGCTGATCCGCGACGGCGCGCTGCTGGTGGAAAGCGTCGAGCACGTCCTGGAGGCCTTGCGCG

GCTGGACGCAGGCGGGGCCAGCGGAGGCGCCTGTAGCGTCGCTGGCCCATCCCTTGCTGGAGTTGCTGCGCGCCGCGCCA

TACAGCAGCGAAGGCCTGGCCGCCGCCAGCGGCTGGGCGCTGCCCGAGGTGCTGGCGGCGCTCACCGAGCTGGAGCTGGA

CGGGCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(298-355)

DNA recombination-mediator protein A (DNA_processg_A)

(80-283)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio campbellii strain DS40M4	44.384	100	0.448
dprA	Legionella pneumophila strain ERS1305867	44.475	100	0.445
dprA	Acinetobacter baylyi ADP1	43.099	98.066	0.423
dprA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.69	98.066	0.409
dprA	Acinetobacter baumannii strain A118	39.377	97.514	0.384
dprA	Acinetobacter baumannii D1279779	39.377	97.514	0.384
dprA	Neisseria meningitidis MC58	45.302	82.32	0.373
dprA	Neisseria meningitidis strain C311	45.302	82.32	0.373
dprA	Haemophilus influenzae Rd KW20	44.667	82.873	0.37
dprA	Neisseria gonorrhoeae MS11	44.631	82.32	0.367
dprA	Neisseria gonorrhoeae strain FA1090	44.631	82.32	0.367

Detailed information NTG0459191