Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   JHW37_RS00100 Genome accession   NZ_CP068238
Coordinates   20707..21732 (+) Length   341 a.a.
NCBI ID   WP_043099678.1    Uniprot ID   A0A2R3IX49
Organism   Pseudomonas aeruginosa strain A39-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 15707..26732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS00080 (JHW37_00080) trkA 16363..17736 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  JHW37_RS00085 (JHW37_00085) rsmB 17764..19068 (-) 1305 WP_053816455.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JHW37_RS00090 (JHW37_00090) fmt 19065..20009 (-) 945 WP_043099675.1 methionyl-tRNA formyltransferase -
  JHW37_RS00095 (JHW37_00095) def 20062..20568 (-) 507 WP_011979050.1 peptide deformylase -
  JHW37_RS00100 (JHW37_00100) tsaP 20707..21732 (+) 1026 WP_043099678.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JHW37_RS00105 (JHW37_00105) dprA 21867..22955 (+) 1089 WP_054080537.1 DNA-processing protein DprA Machinery gene
  JHW37_RS00110 (JHW37_00110) - 22995..23552 (+) 558 WP_043099682.1 L-threonylcarbamoyladenylate synthase -
  JHW37_RS00115 (JHW37_00115) - 23563..24540 (-) 978 WP_043099683.1 quinone oxidoreductase family protein -
  JHW37_RS00120 (JHW37_00120) hemF 24732..25649 (+) 918 WP_011979055.1 oxygen-dependent coproporphyrinogen oxidase -
  JHW37_RS00125 (JHW37_00125) aroE 25707..26531 (+) 825 WP_003156232.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37554.95 Da        Isoelectric Point: 9.3439

>NTDB_id=459190 JHW37_RS00100 WP_043099678.1 20707..21732(+) (tsaP) [Pseudomonas aeruginosa strain A39-1]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPQLWHANPQIQNPHLIYPGDTLSLVYI
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTAAPYIVAGNAERIVSGTGDRVYA
RGKFADGQPAYGIFRQGKVYVDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYQKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=459190 JHW37_RS00100 WP_043099678.1 20707..21732(+) (tsaP) [Pseudomonas aeruginosa strain A39-1]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCGTGGAAGTGGC
CGCAGCTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACATC
GATGGCCAGCCGCGCCTGGTGCTGAACCGCGGCGAGTCGCGCGGCACCATCAAGCTTTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCGATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAATCGCATCGTCGATGACGAGA
AGACCTTCACCGCTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCGTCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACGTCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAGGGCGACGTCGCCACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGCGCGGTGAACTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAGATCATCGACGTGCCGCGTGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGCCTCGCCGAAGGCAACGTGCTGGCCATCTACAAGGTCGGCGAGACGGTGCGCG
ATCGCGTCACCGGGGAGTCGGTGAAGATCCCCGACGAGCGCGCCGGCCTGCTGATGGTGTTCCGCACCTACCAGAAGCTG
AGCTACGCCCTGGTGCTGATGGCCAGCAGGCCCCTCTCGGTCACCGACAGGGTGCAGAACCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IX49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

35.967

100

0.387