Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV341_RS16030 Genome accession   NZ_CP056219
Coordinates   3253581..3254195 (-) Length   204 a.a.
NCBI ID   WP_103283682.1    Uniprot ID   A0AAW7H3I9
Organism   Citrobacter sp. RHBSTW-00976     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3248581..3259195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV341_RS16015 (HV341_16020) helD 3248805..3250859 (-) 2055 WP_103283684.1 DNA helicase IV -
  HV341_RS16020 (HV341_16025) - 3250985..3251431 (+) 447 WP_103283683.1 YccF domain-containing protein -
  HV341_RS16025 (HV341_16030) yccS 3251450..3253603 (+) 2154 WP_103284452.1 YccS family putative transporter -
  HV341_RS16030 (HV341_16035) sxy/tfoX 3253581..3254195 (-) 615 WP_103283682.1 TfoX/Sxy family DNA transformation protein Regulator
  HV341_RS16035 (HV341_16040) sulA 3254412..3254921 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  HV341_RS16040 (HV341_16045) ompA 3255279..3256337 (+) 1059 WP_016156137.1 porin OmpA -
  HV341_RS16045 (HV341_16050) matP 3256436..3256888 (-) 453 WP_103283681.1 macrodomain Ter protein MatP -
  HV341_RS16050 (HV341_16055) - 3257074..3258834 (+) 1761 WP_016156136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23267.66 Da        Isoelectric Point: 8.9391

>NTDB_id=458743 HV341_RS16030 WP_103283682.1 3253581..3254195(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00976]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPRY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=458743 HV341_RS16030 WP_103283682.1 3253581..3254195(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00976]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAAGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGAGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681