Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   I6J12_RS00050 Genome accession   NZ_CP068060
Coordinates   4639..4965 (+) Length   108 a.a.
NCBI ID   WP_020999447.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1155     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..9965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J12_RS00010 (I6J12_00010) - 845..1387 (+) 543 WP_003038192.1 DUF1366 domain-containing protein -
  I6J12_RS00015 (I6J12_00015) - 1405..1806 (+) 402 WP_003038210.1 hypothetical protein -
  I6J12_RS00020 (I6J12_00020) - 1808..2140 (+) 333 WP_003038184.1 phage holin -
  I6J12_RS00025 (I6J12_00025) - 2143..2892 (+) 750 WP_003038204.1 PlySs2 family phage lysin -
  I6J12_RS00030 (I6J12_00030) comGC 3315..3584 (+) 270 WP_003035361.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J12_RS00035 (I6J12_00035) comGD 3544..3972 (+) 429 WP_020999411.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6J12_RS00040 (I6J12_00040) comGE/cglE 3944..4237 (+) 294 WP_003035318.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6J12_RS00045 (I6J12_00045) comGF/cglF 4221..4658 (+) 438 WP_003035329.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6J12_RS00050 (I6J12_00050) comGG/cglG 4639..4965 (+) 327 WP_020999447.1 competence type IV pilus minor pilin ComGG Machinery gene
  I6J12_RS00055 (I6J12_00055) comGH 5050..6003 (+) 954 WP_003035359.1 class I SAM-dependent methyltransferase Machinery gene
  I6J12_RS00060 (I6J12_00060) - 6050..7249 (+) 1200 WP_003035323.1 acetate kinase -
  I6J12_RS00065 (I6J12_00065) glmS 7639..9453 (+) 1815 WP_020999448.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12863.68 Da        Isoelectric Point: 10.2346

>NTDB_id=458747 I6J12_RS00050 WP_020999447.1 4639..4965(+) (comGG/cglG) [Streptococcus anginosus strain FDAARGOS_1155]
MWKQRVKAGIMLYALFITAVFSLLLQFYLHRQTANHRNFTLNRERIQAYAMAAVANENPKQRNFEQGYVQDQKDEKGFIL
TVTMNTGRRYQFRFPLMHSNQTNDNLDE

Nucleotide


Download         Length: 327 bp        

>NTDB_id=458747 I6J12_RS00050 WP_020999447.1 4639..4965(+) (comGG/cglG) [Streptococcus anginosus strain FDAARGOS_1155]
GTGTGGAAACAAAGAGTTAAAGCAGGTATTATGCTCTATGCCCTTTTTATAACAGCTGTCTTTAGCTTACTTTTGCAATT
TTACCTTCATCGGCAAACTGCAAATCACAGGAATTTCACCCTAAACCGAGAGCGAATACAGGCTTATGCAATGGCAGCTG
TAGCAAATGAAAATCCTAAACAAAGGAATTTTGAACAGGGGTATGTGCAAGATCAGAAAGATGAGAAAGGGTTCATCCTG
ACAGTAACAATGAACACTGGTCGCCGTTATCAATTTCGCTTCCCACTTATGCATTCCAATCAAACCAATGACAATTTAGA
CGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae D39

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae R6

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae TIGR4

43

92.593

0.398
  comGG/cglG Streptococcus mitis NCTC 12261

42.424

91.667

0.389
  comGG/cglG Streptococcus mitis SK321

41.414

91.667

0.38