Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HV341_RS22815 | Genome accession | NZ_CP056219 |
| Coordinates | 4694599..4695126 (-) | Length | 175 a.a. |
| NCBI ID | WP_016155359.1 | Uniprot ID | A0AAE2J7N6 |
| Organism | Citrobacter sp. RHBSTW-00976 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4650719..4718347 | 4694599..4695126 | within | 0 |
Gene organization within MGE regions
Location: 4650719..4718347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV341_RS22605 (HV341_22615) | - | 4650719..4652237 (+) | 1519 | Protein_4456 | sugar ABC transporter ATP-binding protein | - |
| HV341_RS22610 (HV341_22620) | - | 4652230..4653225 (+) | 996 | WP_016155386.1 | hypothetical protein | - |
| HV341_RS22615 (HV341_22625) | - | 4653255..4654196 (+) | 942 | WP_019077849.1 | ABC transporter substrate-binding protein | - |
| HV341_RS22625 (HV341_22635) | - | 4655023..4655430 (-) | 408 | WP_326926168.1 | hypothetical protein | - |
| HV341_RS22630 (HV341_22640) | - | 4655474..4656097 (-) | 624 | Protein_4461 | hypothetical protein | - |
| HV341_RS26685 | - | 4656862..4656966 (-) | 105 | Protein_4463 | hypothetical protein | - |
| HV341_RS22640 (HV341_22650) | - | 4657147..4658550 (+) | 1404 | WP_001567368.1 | ISNCY-like element ISKpn21 family transposase | - |
| HV341_RS22645 (HV341_22655) | - | 4658579..4659211 (-) | 633 | WP_001567369.1 | hypothetical protein | - |
| HV341_RS22650 (HV341_22660) | acs | 4659684..4661642 (+) | 1959 | WP_016155371.1 | acetate--CoA ligase | - |
| HV341_RS22655 (HV341_22665) | - | 4661879..4662193 (+) | 315 | WP_016155370.1 | DUF485 domain-containing protein | - |
| HV341_RS22660 (HV341_22670) | actP | 4662190..4663839 (+) | 1650 | WP_016155369.1 | cation/acetate symporter ActP | - |
| HV341_RS22665 (HV341_22675) | - | 4663882..4664571 (-) | 690 | WP_049268855.1 | LrgB family protein | - |
| HV341_RS22670 (HV341_22680) | - | 4664564..4664974 (-) | 411 | WP_016155367.1 | CidA/LrgA family protein | - |
| HV341_RS22675 (HV341_22685) | - | 4665076..4665966 (+) | 891 | WP_047357727.1 | LysR family transcriptional regulator | - |
| HV341_RS22680 (HV341_22690) | - | 4666051..4667697 (-) | 1647 | WP_016155450.1 | Na+/H+ antiporter | - |
| HV341_RS22685 (HV341_22695) | ghxP | 4667855..4669204 (-) | 1350 | WP_016155449.1 | guanine/hypoxanthine transporter GhxP | - |
| HV341_RS22690 (HV341_22700) | soxR | 4669808..4670266 (-) | 459 | WP_016155363.1 | redox-sensitive transcriptional activator SoxR | - |
| HV341_RS22695 (HV341_22705) | soxS | 4670353..4670676 (+) | 324 | WP_016155362.1 | superoxide response transcriptional regulator SoxS | - |
| HV341_RS22700 (HV341_22710) | - | 4670679..4672016 (-) | 1338 | Protein_4476 | EAL domain-containing protein | - |
| HV341_RS22705 (HV341_22715) | - | 4672085..4673065 (+) | 981 | WP_000019445.1 | IS5-like element ISKpn26 family transposase | - |
| HV341_RS26690 | - | 4673047..4673226 (+) | 180 | WP_326926169.1 | hypothetical protein | - |
| HV341_RS22710 (HV341_22720) | - | 4673515..4673796 (+) | 282 | WP_016155360.1 | YjcB family protein | - |
| HV341_RS22715 (HV341_22725) | - | 4674061..4674306 (-) | 246 | WP_048216952.1 | hypothetical protein | - |
| HV341_RS22720 (HV341_22730) | - | 4674964..4676328 (-) | 1365 | WP_059347288.1 | anti-phage deoxyguanosine triphosphatase | - |
| HV341_RS22725 (HV341_22735) | - | 4676856..4677422 (+) | 567 | WP_081051437.1 | DNA adenine methylase | - |
| HV341_RS22730 (HV341_22740) | - | 4677419..4678264 (+) | 846 | WP_048216955.1 | 8-oxoguanine DNA glycosylase | - |
| HV341_RS22735 (HV341_22745) | - | 4678208..4678882 (-) | 675 | WP_223862018.1 | dehydrogenase | - |
| HV341_RS22740 (HV341_22750) | - | 4678860..4679465 (-) | 606 | WP_048216956.1 | 7-cyano-7-deazaguanine synthase | - |
| HV341_RS22745 (HV341_22755) | - | 4679462..4680703 (-) | 1242 | WP_081051438.1 | PfkB family carbohydrate kinase | - |
| HV341_RS22750 (HV341_22760) | - | 4680700..4681032 (-) | 333 | WP_048216957.1 | hypothetical protein | - |
| HV341_RS22755 (HV341_22765) | - | 4681392..4681997 (+) | 606 | WP_048216958.1 | hypothetical protein | - |
| HV341_RS22760 (HV341_22770) | - | 4682282..4682524 (-) | 243 | WP_048216959.1 | hypothetical protein | - |
| HV341_RS26695 | - | 4682784..4682852 (+) | 69 | Protein_4490 | hypothetical protein | - |
| HV341_RS22765 (HV341_22775) | - | 4682954..4683985 (+) | 1032 | WP_001752311.1 | IS630-like element ISEc33 family transposase | - |
| HV341_RS22770 (HV341_22780) | - | 4684021..4684404 (+) | 384 | Protein_4492 | site-specific integrase | - |
| HV341_RS22775 (HV341_22785) | - | 4684408..4685754 (+) | 1347 | WP_326928912.1 | AAA family ATPase | - |
| HV341_RS22785 (HV341_22795) | - | 4686487..4687311 (+) | 825 | WP_181500158.1 | ATP-dependent endonuclease | - |
| HV341_RS22790 (HV341_22800) | - | 4687314..4689005 (+) | 1692 | WP_059347290.1 | ATP-dependent helicase | - |
| HV341_RS22795 (HV341_22805) | - | 4689206..4689625 (-) | 420 | WP_048216962.1 | hypothetical protein | - |
| HV341_RS22800 (HV341_22810) | - | 4689618..4691651 (-) | 2034 | WP_048216963.1 | integrase | - |
| HV341_RS22805 (HV341_22815) | - | 4691644..4693203 (-) | 1560 | WP_096150258.1 | site-specific integrase | - |
| HV341_RS22810 (HV341_22820) | - | 4693193..4694440 (-) | 1248 | WP_048216965.1 | site-specific integrase | - |
| HV341_RS22815 (HV341_22825) | ssb | 4694599..4695126 (-) | 528 | WP_016155359.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| HV341_RS22820 (HV341_22830) | uvrA | 4695378..4698200 (+) | 2823 | WP_016155358.1 | excinuclease ABC subunit UvrA | - |
| HV341_RS22825 (HV341_22835) | - | 4698295..4698651 (-) | 357 | WP_016155357.1 | MmcQ/YjbR family DNA-binding protein | - |
| HV341_RS22830 (HV341_22840) | aphA | 4698778..4699491 (-) | 714 | WP_003826615.1 | acid phosphatase AphA | - |
| HV341_RS22835 (HV341_22845) | tyrB | 4699741..4700934 (-) | 1194 | WP_103284322.1 | aromatic amino acid transaminase | - |
| HV341_RS22840 (HV341_22850) | alr | 4701064..4702143 (-) | 1080 | WP_016155354.1 | alanine racemase | - |
| HV341_RS22845 (HV341_22855) | dnaB | 4702191..4703606 (-) | 1416 | WP_003826610.1 | replicative DNA helicase | - |
| HV341_RS22850 (HV341_22860) | - | 4703671..4704654 (+) | 984 | WP_016155445.1 | quinone oxidoreductase | - |
| HV341_RS22855 (HV341_22865) | pspG | 4704887..4705129 (-) | 243 | WP_016155352.1 | envelope stress response protein PspG | - |
| HV341_RS22860 (HV341_22870) | dusA | 4705263..4706261 (-) | 999 | WP_016155444.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| HV341_RS22865 (HV341_22875) | - | 4706369..4706857 (-) | 489 | WP_046275040.1 | cupin domain-containing protein | - |
| HV341_RS22870 (HV341_22880) | zur | 4706973..4707491 (+) | 519 | WP_046275041.1 | zinc uptake transcriptional repressor Zur | - |
| HV341_RS22875 (HV341_22885) | - | 4707540..4707749 (-) | 210 | WP_019077869.1 | CsbD family protein | - |
| HV341_RS22880 (HV341_22890) | dinF | 4707885..4709204 (-) | 1320 | WP_103284354.1 | MATE family efflux transporter DinF | - |
| HV341_RS22885 (HV341_22895) | lexA | 4709339..4709947 (-) | 609 | WP_003826596.1 | transcriptional repressor LexA | - |
| HV341_RS22890 (HV341_22900) | - | 4710057..4710425 (-) | 369 | WP_003826594.1 | diacylglycerol kinase | - |
| HV341_RS22895 (HV341_22905) | plsB | 4710597..4713017 (+) | 2421 | WP_103284355.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| HV341_RS22900 (HV341_22910) | ubiA | 4713078..4713950 (-) | 873 | WP_003826589.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| HV341_RS22905 (HV341_22915) | ubiC | 4713964..4714461 (-) | 498 | WP_016155346.1 | chorismate lyase | - |
| HV341_RS22910 (HV341_22920) | malM | 4714642..4715589 (-) | 948 | WP_016155345.1 | maltose operon protein MalM | - |
| HV341_RS22915 (HV341_22925) | - | 4715703..4717061 (-) | 1359 | WP_016155344.1 | maltoporin | - |
| HV341_RS22920 (HV341_22930) | malK | 4717238..4718347 (-) | 1110 | WP_016155343.1 | maltose/maltodextrin ABC transporter ATP-binding protein MalK | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18749.79 Da Isoelectric Point: 5.2456
>NTDB_id=458746 HV341_RS22815 WP_016155359.1 4694599..4695126(-) (ssb) [Citrobacter sp. RHBSTW-00976]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=458746 HV341_RS22815 WP_016155359.1 4694599..4695126(-) (ssb) [Citrobacter sp. RHBSTW-00976]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGTTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCG
CCGTCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGTTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCG
CCGTCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.586 |
100 |
0.771 |
| ssb | Glaesserella parasuis strain SC1401 |
57.609 |
100 |
0.606 |
| ssb | Neisseria meningitidis MC58 |
48.333 |
100 |
0.497 |
| ssb | Neisseria gonorrhoeae MS11 |
48.333 |
100 |
0.497 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.111 |
100 |
0.371 |