Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HUK62_RS02960 Genome accession   NZ_CP055277
Coordinates   647557..648783 (-) Length   408 a.a.
NCBI ID   WP_176537050.1    Uniprot ID   A0A7H8SD37
Organism   Acinetobacter sp. NEB 394     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 642557..653783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS02930 (HUK62_02930) - 643704..643844 (+) 141 WP_176537047.1 hypothetical protein -
  HUK62_RS02935 (HUK62_02935) - 643911..644234 (+) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -
  HUK62_RS02940 (HUK62_02940) rlmB 644377..645126 (+) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HUK62_RS02945 (HUK62_02945) - 645159..646076 (+) 918 WP_176537048.1 DMT family transporter -
  HUK62_RS02950 (HUK62_02950) coaE 646091..646690 (-) 600 WP_062035173.1 dephospho-CoA kinase -
  HUK62_RS02955 (HUK62_02955) pilD 646697..647557 (-) 861 WP_176537049.1 A24 family peptidase Machinery gene
  HUK62_RS02960 (HUK62_02960) pilC 647557..648783 (-) 1227 WP_176537050.1 type II secretion system F family protein Machinery gene
  HUK62_RS02965 (HUK62_02965) pilB 648814..650526 (-) 1713 WP_176537051.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HUK62_RS02970 (HUK62_02970) tpiA 650806..651597 (+) 792 WP_176537052.1 triose-phosphate isomerase -
  HUK62_RS02975 (HUK62_02975) secG 651611..651940 (+) 330 WP_004692710.1 preprotein translocase subunit SecG -
  HUK62_RS03005 (HUK62_03005) rimP 652891..653415 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44834.28 Da        Isoelectric Point: 9.8660

>NTDB_id=457369 HUK62_RS02960 WP_176537050.1 647557..648783(-) (pilC) [Acinetobacter sp. NEB 394]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=457369 HUK62_RS02960 WP_176537050.1 647557..648783(-) (pilC) [Acinetobacter sp. NEB 394]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTCGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGGATAATGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACTCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCGCTGGTTCAAGGTTTTGAAATTGTGGCTGAAGGCCTAGAAAACCCATCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAAGGCGGTAATACCTTTGCGGGAGCACTCAAAAAATATCCGCAATATTTCGACA
ACTTATTCTGTTCATTAGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACCATGCTGGACCGTGTAGCGGTCTATAAA
GAAAAAAGTGAATTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATCGT
GACTATTATTTTGATGGTCAAAGTTGTGCCTGTTTTCCAAGATTTATTCAGCTCTTTTGGTGCAGACTTACCTGCATTCA
CTAAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTTGTGATTACA
GCTTTACTCGAAACCAAAAAGCGTAGTAAAAAGTTTCGTGACATGTTGGATAAAGCCGCGCTGAAAGCCCCAATTTTTGG
TGATTTAGTCTATAAAGCAATTATCGCGCGCTATAGCCGCACGCTGTCTACCACCTTTGCTGCGGGTGTACCCTTAATTG
ATGCTCTCGAATCTACAGCAGGCGCAACCAACAATGTTGTGTACGAAGAAGCTGTGATGAAGATTCGTGAAGATGTCGCA
ACAGGGCAACAGCTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCCGTACAGATGGTGGCGATTGGTGA
AGAATCTGGTGCGCTCGATGCCATGCTGGATAAAGTTGCAACTCACTATGAAAACGAAGTCGATAATGCGGTAGATGGCT
TAACCTCAATGATGGAGCCTCTCATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SD37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.971

100

0.89
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.667

100

0.417
  pilC Thermus thermophilus HB27

36.658

98.284

0.36