Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HUI97_RS18470 Genome accession   NZ_CP054855
Coordinates   4049007..4050248 (+) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain 1708-29120     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4044007..4055248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUI97_RS18445 (HUI97_18445) ampD 4044247..4044822 (-) 576 WP_206900638.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HUI97_RS18450 (HUI97_18450) - 4044953..4045423 (+) 471 WP_206900639.1 retropepsin-like aspartic protease family protein -
  HUI97_RS18455 (HUI97_18455) nadC 4045427..4046290 (+) 864 WP_206900640.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HUI97_RS18460 (HUI97_18460) - 4046606..4047058 (+) 453 WP_108541638.1 pilin -
  HUI97_RS18465 (HUI97_18465) pilB 4047062..4048768 (+) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  HUI97_RS18470 (HUI97_18470) pilC 4049007..4050248 (+) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  HUI97_RS18475 (HUI97_18475) pilD 4050310..4051182 (+) 873 WP_206900641.1 prepilin peptidase Machinery gene
  HUI97_RS18480 (HUI97_18480) coaE 4051200..4051808 (+) 609 WP_206900642.1 dephospho-CoA kinase -
  HUI97_RS18485 (HUI97_18485) zapD 4051853..4052575 (+) 723 WP_041210678.1 cell division protein ZapD -
  HUI97_RS18490 (HUI97_18490) yacG 4052585..4052779 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  HUI97_RS18495 (HUI97_18495) mutT 4052852..4053256 (-) 405 WP_206900643.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=455000 HUI97_RS18470 WP_005336136.1 4049007..4050248(+) (pilC) [Aeromonas veronii strain 1708-29120]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=455000 HUI97_RS18470 WP_005336136.1 4049007..4050248(+) (pilC) [Aeromonas veronii strain 1708-29120]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATTAAACCGATGGATATCGCCATCGTCTCCCGT
CAGATCACCACCATGCTCTCCGCCGGTGTACCGCTAGTGCAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTTGAGACCGGAACCCCCATGTCGGAGGCGCTGCGCCGCCATCCCC
TCTACTTTGATGATCTCTATTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAGACCATCTACGACCGTATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGTGCCGAGC
TGCCTGTGTTCACCCAGTTTGTTATCGGCATATCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGAATGATCCTGCACAAGGCGGCGATGGCCCGCTTTGCCCGTACTCTGTCAACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCGGCTGGGGCCTCGGGTAACTATGTCTATCGCACCGCGGTCATGGCGATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAAGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGTATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTTGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368