NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HUI97_RS18475	Genome accession	NZ_CP054855
Coordinates	4050310..4051182 (+)	Length	290 a.a.
NCBI ID	WP_206900641.1	Uniprot ID	-
Organism	Aeromonas veronii strain 1708-29120
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4045310..4056182

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUI97_RS18455 (HUI97_18455)	nadC	4045427..4046290 (+)	864	WP_206900640.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HUI97_RS18460 (HUI97_18460)	-	4046606..4047058 (+)	453	WP_108541638.1	pilin	-
HUI97_RS18465 (HUI97_18465)	pilB	4047062..4048768 (+)	1707	WP_005336134.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HUI97_RS18470 (HUI97_18470)	pilC	4049007..4050248 (+)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
HUI97_RS18475 (HUI97_18475)	pilD	4050310..4051182 (+)	873	WP_206900641.1	prepilin peptidase	Machinery gene
HUI97_RS18480 (HUI97_18480)	coaE	4051200..4051808 (+)	609	WP_206900642.1	dephospho-CoA kinase	-
HUI97_RS18485 (HUI97_18485)	zapD	4051853..4052575 (+)	723	WP_041210678.1	cell division protein ZapD	-
HUI97_RS18490 (HUI97_18490)	yacG	4052585..4052779 (+)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
HUI97_RS18495 (HUI97_18495)	mutT	4052852..4053256 (-)	405	WP_206900643.1	8-oxo-dGTP diphosphatase MutT	-
HUI97_RS18500 (HUI97_18500)	secA	4053331..4056051 (-)	2721	WP_206900644.1	preprotein translocase subunit SecA	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32087.35 Da Isoelectric Point: 6.7417

                                >NTDB_id=455001 HUI97_RS18475 WP_206900641.1 4050310..4051182(+) (pilD) [Aeromonas veronii strain 1708-29120]

MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATAPERYNLMVPRSACPHCGHA

ITALENIPLLSWLWLKGRCSECQAPISARYPLVELLTALLSVAVAMVISPGWGALAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLSGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL

VGAIIGISLIALRKHHRGNPIPFGPYLAIAGWIAMLWGDTITRWYLTTIL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=455001 HUI97_RS18475 WP_206900641.1 4050310..4051182(+) (pilD) [Aeromonas veronii strain 1708-29120]

ATGACACTTCTTCTCGAGCTGGCTCACGGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTTTTCTCCCTGATGATCGG

CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCAGCTACTTCG

CCCCCGATGAGGAGGCCACTGCGCCAGAACGCTACAACCTGATGGTCCCCCGCTCCGCATGCCCTCACTGTGGCCACGCC

ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAGGGGCGCTGCAGTGAGTGCCAAGCCCCTATCTC

GGCCCGCTATCCGCTGGTTGAACTGCTGACAGCGCTGCTCTCGGTGGCCGTAGCCATGGTGATTTCACCGGGTTGGGGTG

CCCTTGCCGCCCTGCTGCTGACCTGGGTATTGGTGGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCAGATCAG

CTGACCCTGCCGCTGTTGTGGGGCGGTTTGCTGTTCAACCTGAGCGGTGGTTTTGCACCGCTTGCTGATGCTGTGATCGG

TGCCATGGCAGGATATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAACTACTGACCGGCAAGGAAGGGATGGGCTATG

GCGACTTCAAGTTGCTGGCGGCACTGGGAGCCTGGCTCGGTTGGCAGGCACTGCCGATCATACTGCTGCTCTCATCTTTG

GTTGGTGCCATCATCGGCATCTCGCTCATAGCCCTGCGCAAACACCATCGGGGCAACCCCATCCCCTTTGGCCCCTACCT

CGCCATCGCGGGCTGGATTGCGATGCTATGGGGCGATACCATCACCCGCTGGTATCTCACAACCATCCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	62.63	99.655	0.624
pilD	Vibrio campbellii strain DS40M4	55.556	99.31	0.552
pilD	Acinetobacter baumannii D1279779	54.851	92.414	0.507
pilD	Acinetobacter nosocomialis M2	54.851	92.414	0.507
pilD	Neisseria gonorrhoeae MS11	48.352	94.138	0.455

Detailed information NTG0455001