Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HUI95_RS19610 Genome accession   NZ_CP054854
Coordinates   4260453..4261694 (+) Length   413 a.a.
NCBI ID   WP_010635960.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain 1706-28330     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4255453..4266694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUI95_RS19585 (HUI95_19560) ampD 4255841..4256413 (-) 573 WP_206865932.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HUI95_RS19590 (HUI95_19565) - 4256537..4257007 (+) 471 WP_017779055.1 retropepsin-like aspartic protease -
  HUI95_RS19595 (HUI95_19570) nadC 4257012..4257869 (+) 858 WP_094697628.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HUI95_RS19600 (HUI95_19575) - 4258191..4258631 (+) 441 WP_206865933.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HUI95_RS19605 (HUI95_19580) pilB 4258622..4260337 (+) 1716 WP_206867229.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  HUI95_RS19610 (HUI95_19585) pilC 4260453..4261694 (+) 1242 WP_010635960.1 type II secretion system F family protein Machinery gene
  HUI95_RS19615 (HUI95_19590) pilD 4261717..4262589 (+) 873 WP_095591547.1 A24 family peptidase Machinery gene
  HUI95_RS19620 (HUI95_19595) coaE 4262609..4263223 (+) 615 WP_005305656.1 dephospho-CoA kinase -
  HUI95_RS19625 (HUI95_19600) zapD 4263261..4263983 (+) 723 WP_010635957.1 cell division protein ZapD -
  HUI95_RS19630 (HUI95_19605) yacG 4263993..4264187 (+) 195 WP_017782442.1 DNA gyrase inhibitor YacG -
  HUI95_RS19635 (HUI95_19610) mutT 4264248..4264661 (-) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  HUI95_RS19640 (HUI95_19615) - 4264670..4265848 (-) 1179 WP_206865934.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45468.58 Da        Isoelectric Point: 9.8834

>NTDB_id=454970 HUI95_RS19610 WP_010635960.1 4260453..4261694(+) (pilC) [Aeromonas dhakensis strain 1706-28330]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGARIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=454970 HUI95_RS19610 WP_010635960.1 4260453..4261694(+) (pilC) [Aeromonas dhakensis strain 1706-28330]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGTGGCGCCAGAATCAAGCCTATGGACATTGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTGCCTCTGGTCCAAAGCCTGCAGATCATCGCCCGCAGCCACGAGAAAGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGTACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAAACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATTCTGCTGCTGTTCGTCATTCCGCAGTTTGAGGACATCTTCAAGAGCTTCGGCGCCGAAC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAAAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGTGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGTACCCTCTCCACCACCTTTTCCGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGTAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

48.241

96.368

0.465
  pilC Vibrio campbellii strain DS40M4

47.607

96.126

0.458
  pilG Neisseria meningitidis 44/76-A

40.247

98.063

0.395
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilC Thermus thermophilus HB27

38

96.852

0.368