Detailed information NTG0454971

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUI95_RS19615
• Genome accession: NZ_CP054854
• Coordinates: 4261717..4262589 (+)
• Length: 290 a.a.
• NCBI ID: WP_095591547.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain 1706-28330
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4256717..4267589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUI95_RS19595 (HUI95_19570)	nadC	4257012..4257869 (+)	858	WP_094697628.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HUI95_RS19600 (HUI95_19575)	-	4258191..4258631 (+)	441	WP_206865933.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HUI95_RS19605 (HUI95_19580)	pilB	4258622..4260337 (+)	1716	WP_206867229.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HUI95_RS19610 (HUI95_19585)	pilC	4260453..4261694 (+)	1242	WP_010635960.1	type II secretion system F family protein	Machinery gene
HUI95_RS19615 (HUI95_19590)	pilD	4261717..4262589 (+)	873	WP_095591547.1	A24 family peptidase	Machinery gene
HUI95_RS19620 (HUI95_19595)	coaE	4262609..4263223 (+)	615	WP_005305656.1	dephospho-CoA kinase	-
HUI95_RS19625 (HUI95_19600)	zapD	4263261..4263983 (+)	723	WP_010635957.1	cell division protein ZapD	-
HUI95_RS19630 (HUI95_19605)	yacG	4263993..4264187 (+)	195	WP_017782442.1	DNA gyrase inhibitor YacG	-
HUI95_RS19635 (HUI95_19610)	mutT	4264248..4264661 (-)	414	WP_005305665.1	8-oxo-dGTP diphosphatase MutT	-
HUI95_RS19640 (HUI95_19615)	-	4264670..4265848 (-)	1179	WP_206865934.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32465.81 Da
• Isoelectric Point: 6.7410

>NTDB_id=454971 HUI95_RS19615 WP_095591547.1 4261717..4262589(+) (pilD) [Aeromonas dhakensis strain 1706-28330]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWALLAALLLTWGLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=454971 HUI95_RS19615 WP_095591547.1 4261717..4262589(+) (pilD) [Aeromonas dhakensis strain 1706-28330]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTACCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAGGAACGCTACAACCTGATGGTGCCGCGTTCCGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTACTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGCTGACAGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCGGGCTGGGCTT
TGCTGGCCGCCCTGCTGCTCACCTGGGGGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCATTGCTGTGGGGCGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGCTGCTGCTTTCCTCCCTG
GTCGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT
GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.888	98.621	0.61
pilD	Vibrio campbellii strain DS40M4	58.131	99.655	0.579
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462