Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HUK68_RS15720 Genome accession   NZ_CP054840
Coordinates   3396524..3397732 (+) Length   402 a.a.
NCBI ID   WP_175505034.1    Uniprot ID   A0A6N1X443
Organism   Comamonas antarctica strain 16-35-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3391524..3402732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK68_RS15705 (HUK68_15705) - 3391985..3394075 (-) 2091 WP_175505031.1 aminotransferase class V-fold PLP-dependent enzyme -
  HUK68_RS15710 (HUK68_15710) - 3394173..3394640 (+) 468 WP_175505032.1 Lrp/AsnC family transcriptional regulator -
  HUK68_RS15715 (HUK68_15715) pilB 3394761..3396506 (+) 1746 WP_175505033.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HUK68_RS15720 (HUK68_15720) pilC 3396524..3397732 (+) 1209 WP_175505034.1 type II secretion system F family protein Machinery gene
  HUK68_RS15725 (HUK68_15725) pilD 3397738..3398619 (+) 882 WP_175505867.1 A24 family peptidase Machinery gene
  HUK68_RS15730 (HUK68_15730) coaE 3398619..3399254 (+) 636 WP_175505035.1 dephospho-CoA kinase -
  HUK68_RS15735 (HUK68_15735) zapD 3399378..3400133 (+) 756 WP_175505036.1 cell division protein ZapD -
  HUK68_RS15740 (HUK68_15740) - 3400141..3400353 (+) 213 WP_175505037.1 DNA gyrase inhibitor YacG -
  HUK68_RS15745 (HUK68_15745) - 3400363..3400824 (-) 462 WP_175505038.1 NUDIX domain-containing protein -
  HUK68_RS15750 (HUK68_15750) - 3400821..3401768 (-) 948 WP_175505039.1 ATP-binding protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 44063.85 Da        Isoelectric Point: 9.3953

>NTDB_id=454846 HUK68_RS15720 WP_175505034.1 3396524..3397732(+) (pilC) [Comamonas antarctica strain 16-35-5]
MATAGIQDFVFEWEGKDRHGKIVRGETRAGGENQVQATLRRQGIFPTKIKKRRMRSGKKIKPKDIALFTRQLATMMKAGV
PLLQSFDIVARGNTNTSVTRLLNDIRADVEVGTSLNAAFRKHPMYFNSLYCNLVEAGESAGILETLLDRLAVYMEKTEAI
KGKIKSALMYPSAVIVVTFVVIAVIMIFVVPAFKEVFSSFGADLPAPTLLVMAISEIFVQWWWLIFGLLGGGIYFFIQAW
KRSPRIQMTMDRLLLKLPIFGVLIEKSAVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVYAQATEKIQQEVSTGTSLT
AAMTSTNVFPSMVLQMTAIGEESGSIDHMLGKAADFYEEEVDEMVAGLSSLMEPIIIVFLGVIIGGIVVAMYLPIFQLGQ
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=454846 HUK68_RS15720 WP_175505034.1 3396524..3397732(+) (pilC) [Comamonas antarctica strain 16-35-5]
ATGGCGACTGCAGGTATCCAGGATTTTGTCTTCGAGTGGGAAGGCAAGGACCGGCATGGCAAGATCGTGCGCGGCGAGAC
GCGCGCTGGCGGCGAGAACCAGGTGCAGGCCACCTTGCGCCGCCAGGGCATCTTCCCGACCAAGATCAAGAAGCGCCGCA
TGCGCTCGGGCAAGAAGATCAAGCCCAAGGACATCGCGCTGTTCACACGCCAGCTGGCCACCATGATGAAGGCCGGCGTG
CCGCTGCTGCAGTCGTTCGACATCGTCGCGCGCGGCAACACCAACACCAGCGTGACCCGGCTGCTCAACGACATCCGCGC
GGACGTCGAGGTCGGCACCTCGCTGAACGCGGCGTTCCGCAAGCATCCGATGTATTTCAACAGCCTCTACTGCAACCTGG
TCGAGGCCGGCGAGTCGGCGGGTATCCTGGAGACGCTGCTGGACCGCCTCGCGGTCTACATGGAAAAGACCGAAGCCATC
AAGGGCAAGATCAAGTCGGCGCTGATGTATCCGAGCGCGGTGATCGTTGTGACCTTCGTGGTCATCGCGGTGATCATGAT
CTTCGTGGTGCCGGCGTTCAAGGAGGTGTTCAGCTCGTTTGGCGCCGACCTGCCGGCGCCCACGCTGCTGGTCATGGCCA
TCAGCGAGATCTTCGTGCAGTGGTGGTGGCTGATCTTCGGCCTGCTGGGCGGCGGCATCTACTTCTTCATCCAGGCCTGG
AAACGCAGCCCGCGCATCCAGATGACCATGGACCGGCTGCTGCTGAAGCTGCCGATCTTCGGCGTGCTGATCGAAAAATC
CGCCGTGGCGCGCTGGACGCGCACCCTGTCGACGATGTTTGCCGCGGGCGTGCCGCTGGTCGAGGCGCTGGATTCGGTCG
GCGGCGCGGCGGGCAATGCGGTCTATGCACAGGCCACCGAGAAGATCCAGCAGGAAGTATCGACCGGCACCAGCCTCACC
GCGGCCATGACCTCCACCAATGTCTTTCCCTCGATGGTGCTGCAGATGACCGCCATCGGCGAGGAGTCGGGCTCGATCGA
CCACATGCTGGGCAAGGCTGCCGACTTCTACGAGGAGGAGGTCGACGAGATGGTGGCCGGCCTGTCCAGCCTGATGGAGC
CGATCATCATCGTGTTCCTGGGCGTCATCATCGGCGGCATCGTGGTGGCCATGTATCTGCCGATCTTCCAGTTGGGCCAG
GTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N1X443

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.815

100

0.552
  pilG Neisseria gonorrhoeae MS11

52.632

99.254

0.522
  pilG Neisseria meningitidis 44/76-A

52.381

99.254

0.52
  pilC Legionella pneumophila strain ERS1305867

51.768

98.507

0.51
  pilC Acinetobacter baylyi ADP1

51.256

99.005

0.507
  pilC Acinetobacter baumannii D1279779

49.622

98.756

0.49
  pilC Vibrio campbellii strain DS40M4

38.35

100

0.393
  pilC Thermus thermophilus HB27

39.109

100

0.393
  pilC Vibrio cholerae strain A1552

39.547

98.756

0.391