Detailed information NTG0454847

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUK68_RS15725
• Genome accession: NZ_CP054840
• Coordinates: 3397738..3398619 (+)
• Length: 293 a.a.
• NCBI ID: WP_175505867.1
• Uniprot ID: A0A6N1X8C6
• Organism: Comamonas antarctica strain 16-35-5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3392738..3403619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUK68_RS15710 (HUK68_15710)	-	3394173..3394640 (+)	468	WP_175505032.1	Lrp/AsnC family transcriptional regulator	-
HUK68_RS15715 (HUK68_15715)	pilB	3394761..3396506 (+)	1746	WP_175505033.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HUK68_RS15720 (HUK68_15720)	pilC	3396524..3397732 (+)	1209	WP_175505034.1	type II secretion system F family protein	Machinery gene
HUK68_RS15725 (HUK68_15725)	pilD	3397738..3398619 (+)	882	WP_175505867.1	A24 family peptidase	Machinery gene
HUK68_RS15730 (HUK68_15730)	coaE	3398619..3399254 (+)	636	WP_175505035.1	dephospho-CoA kinase	-
HUK68_RS15735 (HUK68_15735)	zapD	3399378..3400133 (+)	756	WP_175505036.1	cell division protein ZapD	-
HUK68_RS15740 (HUK68_15740)	-	3400141..3400353 (+)	213	WP_175505037.1	DNA gyrase inhibitor YacG	-
HUK68_RS15745 (HUK68_15745)	-	3400363..3400824 (-)	462	WP_175505038.1	NUDIX domain-containing protein	-
HUK68_RS15750 (HUK68_15750)	-	3400821..3401768 (-)	948	WP_175505039.1	ATP-binding protein	-
HUK68_RS15755 (HUK68_15755)	argJ	3401960..3403189 (-)	1230	WP_175505040.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31489.08 Da
• Isoelectric Point: 7.9077

>NTDB_id=454847 HUK68_RS15725 WP_175505867.1 3397738..3398619(+) (pilD) [Comamonas antarctica strain 16-35-5]
MGWEMAALGGVLGLLIGSFLNVVIHRLPKIMEQQWAEECREHAREQALAAGQPLLASPDDAGPRISLSKPRSRCPHCGHA
IRWYENIPVLSYLALRGRCASCQARISARYPVVELATGALFAFCLAHWGPTPAGLAWCGFSAALLALALIDWDTTLLPDD
ITLPLLWAGLLAAALRWTDVALADAVWGAAAGYLSLWLVFWGFKLATGKDGMGYGDFKLFAALGAWFGWQALVPMILAAS
VIGAIVGIAMKLRSQLREGGYIPFGPFLAGAGFAALLFGPQRMLERFLGVLGL

Nucleotide

• Length: 882 bp

>NTDB_id=454847 HUK68_RS15725 WP_175505867.1 3397738..3398619(+) (pilD) [Comamonas antarctica strain 16-35-5]
ATGGGTTGGGAAATGGCCGCCCTGGGCGGCGTACTGGGTCTGCTCATCGGCAGCTTTCTGAATGTCGTGATCCACCGGCT
GCCGAAGATCATGGAGCAGCAGTGGGCCGAGGAATGCCGCGAACACGCGCGGGAGCAGGCGCTGGCCGCAGGCCAGCCCT
TGCTGGCGTCGCCTGACGACGCCGGCCCGCGCATCAGCCTGAGCAAGCCGCGTTCGCGCTGCCCGCACTGCGGCCATGCG
ATCCGCTGGTACGAGAACATTCCGGTGCTGAGCTATCTCGCGCTGCGCGGGCGCTGTGCTTCGTGCCAGGCGCGCATCAG
CGCGCGCTATCCCGTCGTGGAGCTGGCCACCGGCGCGCTGTTCGCCTTCTGCCTGGCGCACTGGGGGCCCACCCCGGCCG
GCCTTGCGTGGTGCGGCTTCAGCGCCGCGCTGCTGGCGCTGGCGCTGATCGACTGGGACACCACCTTGCTGCCCGACGAC
ATCACCCTGCCCTTGCTCTGGGCCGGCCTGCTGGCCGCGGCGCTGCGCTGGACGGACGTGGCGCTGGCCGACGCCGTGTG
GGGCGCGGCCGCGGGCTATCTGTCGCTGTGGCTGGTGTTCTGGGGCTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCT
ATGGCGACTTCAAGCTGTTTGCCGCGCTCGGCGCCTGGTTCGGCTGGCAGGCGCTGGTGCCCATGATCCTCGCGGCTTCG
GTGATTGGCGCCATCGTCGGCATTGCCATGAAGCTGCGCAGCCAGCTGCGCGAAGGCGGCTACATTCCTTTCGGCCCGTT
CCTGGCGGGCGCCGGTTTCGCGGCGCTGCTGTTCGGGCCGCAGCGCATGCTCGAGCGCTTCCTGGGCGTGCTGGGACTGT
GA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (11-127)

3D structure

• AlphaFold DB: A0A6N1X8C6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.357	95.563	0.481
pilD	Vibrio campbellii strain DS40M4	47.603	99.659	0.474
pilD	Acinetobacter baumannii D1279779	45.985	93.515	0.43
pilD	Neisseria gonorrhoeae MS11	47.17	90.444	0.427
pilD	Acinetobacter nosocomialis M2	45.255	93.515	0.423