Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HUE98_RS17420 Genome accession   NZ_CP054699
Coordinates   3541582..3541977 (-) Length   131 a.a.
NCBI ID   WP_241421850.1    Uniprot ID   -
Organism   Candidatus Contubernalis alkalaceticus strain Z-7904     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3536582..3546977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUE98_RS17400 (HUE98_17455) dnaB 3537234..3538583 (-) 1350 WP_241421846.1 replicative DNA helicase -
  HUE98_RS17405 (HUE98_17460) lonC 3538616..3540538 (-) 1923 WP_241421847.1 Lon family ATP-dependent protease -
  HUE98_RS17410 (HUE98_17465) rplI 3540574..3541017 (-) 444 WP_241421848.1 50S ribosomal protein L9 -
  HUE98_RS17415 (HUE98_17470) rpsR 3541287..3541517 (-) 231 WP_241421849.1 30S ribosomal protein S18 -
  HUE98_RS17420 (HUE98_17475) ssbA 3541582..3541977 (-) 396 WP_241421850.1 single-stranded DNA-binding protein Machinery gene
  HUE98_RS17425 (HUE98_17480) rpsF 3541997..3542284 (-) 288 WP_241421851.1 30S ribosomal protein S6 -
  HUE98_RS17430 (HUE98_17485) ychF 3542469..3543566 (-) 1098 WP_241421852.1 redox-regulated ATPase YchF -
  HUE98_RS17435 (HUE98_17490) - 3543764..3543952 (-) 189 WP_241421853.1 DUF951 domain-containing protein -
  HUE98_RS17440 (HUE98_17495) - 3544401..3545270 (-) 870 WP_241421854.1 mechanosensitive ion channel family protein -
  HUE98_RS17445 (HUE98_17500) - 3545451..3546101 (-) 651 WP_241421855.1 adenylate kinase -
  HUE98_RS17450 (HUE98_17505) - 3546204..3546893 (-) 690 WP_241421856.1 CvpA family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14600.28 Da        Isoelectric Point: 4.7621

>NTDB_id=454000 HUE98_RS17420 WP_241421850.1 3541582..3541977(-) (ssbA) [Candidatus Contubernalis alkalaceticus strain Z-7904]
MINSVVLVGRLTRDPELRYTPSGGNAVVNFTLAVNRPFTNQQGEREADFVRIVAWRKLAENCANFLGKGRLAAVTGRLQV
RSYEADDGQRRTIAEVVADNVQFLDKKDSQNKGDSYEDFMGGEVSEDDVPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=454000 HUE98_RS17420 WP_241421850.1 3541582..3541977(-) (ssbA) [Candidatus Contubernalis alkalaceticus strain Z-7904]
ATGATTAATTCAGTAGTTTTAGTAGGAAGGCTTACCCGGGATCCGGAATTGAGGTATACTCCTTCCGGGGGAAACGCCGT
AGTTAATTTTACCTTGGCTGTCAACAGGCCCTTTACTAACCAACAGGGTGAAAGAGAAGCAGATTTTGTTAGAATTGTAG
CCTGGAGAAAACTGGCAGAGAACTGTGCCAATTTTCTAGGTAAAGGCAGATTAGCAGCGGTAACCGGCAGGCTGCAGGTC
AGGAGCTACGAGGCCGATGACGGTCAAAGGAGAACTATAGCCGAGGTTGTTGCGGACAATGTTCAGTTTCTCGACAAAAA
AGATTCACAGAACAAAGGTGATTCTTATGAAGATTTCATGGGGGGAGAAGTATCTGAAGATGATGTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.667

82.443

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

88.55

0.519
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.509

87.023

0.466
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.222

100

0.435
  ssbB/cilA Streptococcus mitis SK321

39.706

100

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

38.971

100

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.971

100

0.405
  ssbB/cilA Streptococcus pneumoniae R6

38.235

100

0.397
  ssbB/cilA Streptococcus pneumoniae Rx1

38.235

100

0.397
  ssbB/cilA Streptococcus pneumoniae D39

38.235

100

0.397
  ssbA Streptococcus mutans UA159

38.346

100

0.389