Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   I6H72_RS04095 Genome accession   NZ_CP066055
Coordinates   830397..831698 (-) Length   433 a.a.
NCBI ID   WP_198458343.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 825397..836698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS04065 (I6H72_04065) - 826011..826568 (-) 558 WP_003070172.1 YutD family protein -
  I6H72_RS04070 (I6H72_04070) sepM 826855..827910 (-) 1056 WP_070669255.1 SepM family pheromone-processing serine protease Regulator
  I6H72_RS04075 (I6H72_04075) coaD 827891..828388 (-) 498 WP_006267255.1 pantetheine-phosphate adenylyltransferase -
  I6H72_RS04080 (I6H72_04080) rsmD 828378..828917 (-) 540 WP_020997641.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6H72_RS04085 (I6H72_04085) hpf 829114..829656 (-) 543 WP_003032381.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6H72_RS04090 (I6H72_04090) comFC/cflB 829735..830400 (-) 666 WP_006267632.1 ComF family protein Machinery gene
  I6H72_RS04095 (I6H72_04095) comFA/cflA 830397..831698 (-) 1302 WP_198458343.1 DEAD/DEAH box helicase Machinery gene
  I6H72_RS04100 (I6H72_04100) - 831755..832390 (+) 636 WP_003035211.1 YigZ family protein -
  I6H72_RS04105 (I6H72_04105) cysK 832489..833418 (+) 930 WP_198458344.1 cysteine synthase A -
  I6H72_RS04110 (I6H72_04110) - 833483..834096 (+) 614 Protein_821 transposase -
  I6H72_RS04115 (I6H72_04115) - 834201..834470 (+) 270 Protein_822 IS30 family transposase -
  I6H72_RS04120 (I6H72_04120) - 834647..835527 (+) 881 Protein_823 ISAs1 family transposase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49197.00 Da        Isoelectric Point: 8.5379

>NTDB_id=453317 I6H72_RS04095 WP_198458343.1 830397..831698(-) (comFA/cflA) [Streptococcus constellatus strain FDAARGOS_1015]
MTELQDCLGRIFTKNQLSPELQLQAQTLTGMVEEKGRLSCNRCGQAIDKEKQQLPIGAYYCRSCLFLGRIRSDEHLYYFS
QEEFPKANVLKWQGKLTEFQAKVSQGLVEAVTKRKDSLVHAVTGAGKTEMIYQVVAQVINQGGAVCLASPRIDVCLELYR
RLKVDFTCDISLLHGESEAYSRSPLVIATTHQLLKFYQAFDLLIVDEVDAFPYVDNPMLYHAVHQAVKVEGTKIFLTATS
TDELDKKVAKGELTRLSLPRRFHGNPLIVPQKIWLADFQKYLGQKKLVPKLEQFVKKQRKTGFPLLIFASEIKRGQEFAE
ILQNNFPNEKVDFVASTTENRLDIVEKFRRKEITILISTTILERGVTFPCVDVFVVEANHRLFSRSALVQIAGRVGRSME
RPTGELIFFHDGTTMAIEKAIKEIREMNQEAGL

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=453317 I6H72_RS04095 WP_198458343.1 830397..831698(-) (comFA/cflA) [Streptococcus constellatus strain FDAARGOS_1015]
ATGACGGAATTACAAGATTGTTTAGGTCGTATTTTTACAAAAAATCAACTGTCACCAGAATTGCAATTGCAAGCACAAAC
CTTAACTGGAATGGTAGAAGAAAAAGGGAGGTTAAGCTGCAATCGCTGTGGACAAGCCATTGACAAAGAAAAACAGCAAC
TACCAATAGGTGCTTATTATTGCAGGTCTTGCTTGTTCTTAGGAAGGATCAGAAGCGATGAACATCTTTACTATTTTTCA
CAGGAAGAGTTTCCTAAAGCGAATGTCTTGAAATGGCAAGGAAAGTTGACAGAATTTCAAGCTAAGGTTTCTCAAGGACT
TGTAGAGGCGGTTACCAAACGCAAAGATAGCTTGGTTCACGCAGTCACGGGAGCCGGAAAGACGGAAATGATCTATCAGG
TGGTGGCACAAGTCATCAATCAAGGCGGAGCCGTCTGCTTAGCTAGCCCCAGAATTGATGTCTGCTTAGAACTTTATCGC
AGACTGAAAGTAGATTTTACCTGTGATATTTCACTCCTGCACGGCGAATCAGAAGCATATTCCCGCAGTCCTCTCGTGAT
TGCCACCACACATCAGCTTCTCAAATTTTATCAAGCATTTGATCTTCTTATCGTTGATGAAGTAGATGCCTTTCCTTATG
TGGACAATCCGATGCTTTATCATGCAGTTCATCAGGCAGTCAAAGTAGAGGGGACGAAGATTTTCTTAACAGCAACTTCC
ACAGATGAGCTGGATAAAAAAGTGGCTAAAGGAGAATTAACTCGTTTGAGTCTACCCAGACGTTTTCATGGCAATCCTTT
GATTGTTCCGCAAAAAATTTGGTTGGCGGATTTTCAAAAATATCTTGGTCAAAAGAAGTTGGTTCCTAAGTTGGAACAAT
TTGTTAAAAAGCAAAGAAAAACAGGTTTTCCTCTTCTCATTTTTGCTTCTGAGATTAAAAGAGGACAAGAATTTGCAGAG
ATTCTCCAAAACAATTTCCCAAATGAAAAAGTTGACTTTGTAGCCTCAACGACTGAAAATCGACTCGATATTGTAGAGAA
ATTTCGTCGAAAAGAAATCACAATCTTAATATCAACGACGATTCTGGAACGTGGCGTGACTTTTCCTTGTGTAGATGTTT
TTGTGGTGGAGGCCAACCACCGTTTGTTTAGTCGCAGCGCTTTGGTACAAATTGCTGGTCGTGTTGGTCGTAGTATGGAG
CGACCAACAGGCGAGTTAATCTTTTTTCATGATGGTACAACTATGGCGATAGAAAAAGCTATTAAAGAAATTCGGGAGAT
GAATCAGGAGGCTGGTTTATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(292-397)

DEAD/DEAH box helicase (DEAD)

(108-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

70.794

98.845

0.7
  comFA/cflA Streptococcus pneumoniae D39

70.794

98.845

0.7
  comFA/cflA Streptococcus pneumoniae R6

70.794

98.845

0.7
  comFA/cflA Streptococcus pneumoniae TIGR4

70.561

98.845

0.697
  comFA/cflA Streptococcus mitis NCTC 12261

70.657

98.383

0.695
  comFA/cflA Streptococcus mitis SK321

70.188

98.383

0.691
  comFA Lactococcus lactis subsp. cremoris KW2

55.276

91.917

0.508
  comFA Latilactobacillus sakei subsp. sakei 23K

39.401

100

0.395
  comFA Bacillus subtilis subsp. subtilis str. 168

39.506

93.533

0.37