Detailed information NTG0453327

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUF98_RS19480
• Genome accession: NZ_CP054560
• Coordinates: 3661527..3662387 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152269.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain YC103
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3656527..3667387

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUF98_RS17640 (HUF98_17565)	secG	3657132..3657461 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
HUF98_RS17645 (HUF98_17570)	tpiA	3657474..3658268 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
HUF98_RS17650 (HUF98_17575)	pilB	3658559..3660271 (+)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HUF98_RS17655 (HUF98_17580)	pilC	3660301..3661527 (+)	1227	WP_179007023.1	type II secretion system F family protein	Machinery gene
HUF98_RS19480 (HUF98_17585)	pilD	3661527..3662387 (+)	861	WP_001152269.1	prepilin peptidase	Machinery gene
HUF98_RS17670 (HUF98_17590)	coaE	3662389..3662985 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
HUF98_RS17675 (HUF98_17595)	-	3662982..3663896 (-)	915	WP_000075014.1	DMT family transporter	-
HUF98_RS17680 (HUF98_17600)	rlmB	3663932..3664681 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
HUF98_RS17685 (HUF98_17605)	-	3664783..3665109 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
HUF98_RS17690 (HUF98_17610)	-	3665186..3666496 (-)	1311	WP_140951865.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.45 Da
• Isoelectric Point: 6.6663

>NTDB_id=453327 HUF98_RS19480 WP_001152269.1 3661527..3662387(+) (pilD) [Acinetobacter baumannii strain YC103]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=453327 HUF98_RS19480 WP_001152269.1 3661527..3662387(+) (pilD) [Acinetobacter baumannii strain YC103]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437