Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | LL3_RS12695 | Genome accession | NC_017190 |
| Coordinates | 2509316..2509630 (-) | Length | 104 a.a. |
| NCBI ID | WP_014470662.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens LL3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2504316..2514630
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL3_RS12650 (LL3_02657) | sinI | 2505000..2505173 (+) | 174 | WP_013352860.1 | anti-repressor SinI | Regulator |
| LL3_RS12655 (LL3_02658) | sinR | 2505207..2505542 (+) | 336 | WP_014470659.1 | transcriptional regulator SinR | Regulator |
| LL3_RS12660 (LL3_02659) | tasA | 2505590..2506375 (-) | 786 | WP_013352862.1 | biofilm matrix protein TasA | - |
| LL3_RS12665 (LL3_02660) | sipW | 2506440..2507024 (-) | 585 | WP_013352863.1 | signal peptidase I SipW | - |
| LL3_RS12670 (LL3_02661) | tapA | 2506996..2507667 (-) | 672 | WP_013352864.1 | amyloid fiber anchoring/assembly protein TapA | - |
| LL3_RS12675 (LL3_02662) | - | 2507925..2508254 (+) | 330 | WP_013352865.1 | DUF3889 domain-containing protein | - |
| LL3_RS12680 (LL3_02663) | - | 2508295..2508474 (-) | 180 | WP_013352866.1 | YqzE family protein | - |
| LL3_RS12685 (LL3_02664) | comGG | 2508528..2508905 (-) | 378 | WP_013352867.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| LL3_RS12690 (LL3_02665) | comGF | 2508907..2509407 (-) | 501 | WP_013352868.1 | competence type IV pilus minor pilin ComGF | - |
| LL3_RS12695 (LL3_02666) | comGE | 2509316..2509630 (-) | 315 | WP_014470662.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| LL3_RS12700 (LL3_02667) | comGD | 2509614..2510051 (-) | 438 | WP_013352869.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LL3_RS12705 (LL3_02668) | comGC | 2510041..2510307 (-) | 267 | WP_044051905.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LL3_RS12710 (LL3_02669) | comGB | 2510354..2511391 (-) | 1038 | WP_013352871.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| LL3_RS12715 (LL3_02670) | comGA | 2511378..2512448 (-) | 1071 | WP_013352872.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LL3_RS12720 (LL3_02672) | - | 2512642..2513592 (-) | 951 | WP_013352873.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11934.89 Da Isoelectric Point: 6.2120
>NTDB_id=45256 LL3_RS12695 WP_014470662.1 2509316..2509630(-) (comGE) [Bacillus amyloliquefaciens LL3]
MQNGNKGFSTIETLSAMAIWLFLMISIVPVWTGMLTDNLKIEEHQEVYQLLHKHISAYMMSGKKQPSPDVTWKEDGDYYK
VCAAVRGEKEMCLSILKTDWLYAS
MQNGNKGFSTIETLSAMAIWLFLMISIVPVWTGMLTDNLKIEEHQEVYQLLHKHISAYMMSGKKQPSPDVTWKEDGDYYK
VCAAVRGEKEMCLSILKTDWLYAS
Nucleotide
Download Length: 315 bp
>NTDB_id=45256 LL3_RS12695 WP_014470662.1 2509316..2509630(-) (comGE) [Bacillus amyloliquefaciens LL3]
ATGCAGAACGGAAATAAGGGGTTCTCTACTATTGAAACACTATCAGCAATGGCTATTTGGCTGTTCCTTATGATTTCTAT
CGTTCCGGTCTGGACGGGCATGCTGACAGACAATCTGAAAATAGAAGAACACCAGGAAGTGTACCAGCTTCTTCATAAAC
ATATCAGCGCATATATGATGTCCGGAAAAAAGCAGCCATCTCCCGATGTGACGTGGAAGGAGGATGGTGATTATTACAAA
GTCTGTGCAGCTGTCCGCGGCGAAAAAGAAATGTGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAA
ATGCAGAACGGAAATAAGGGGTTCTCTACTATTGAAACACTATCAGCAATGGCTATTTGGCTGTTCCTTATGATTTCTAT
CGTTCCGGTCTGGACGGGCATGCTGACAGACAATCTGAAAATAGAAGAACACCAGGAAGTGTACCAGCTTCTTCATAAAC
ATATCAGCGCATATATGATGTCCGGAAAAAAGCAGCCATCTCCCGATGTGACGTGGAAGGAGGATGGTGATTATTACAAA
GTCTGTGCAGCTGTCCGCGGCGAAAAAGAAATGTGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Bacillus subtilis subsp. subtilis str. 168 |
43.478 |
100 |
0.481 |