Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HSZ49_RS09385 Genome accession   NZ_CP054438
Coordinates   1926045..1926446 (-) Length   133 a.a.
NCBI ID   WP_174544049.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1921045..1931446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS09340 (HSZ49_09340) - 1921565..1921870 (-) 306 WP_174544041.1 DUF1140 family protein -
  HSZ49_RS09345 (HSZ49_09345) - 1921871..1922380 (-) 510 WP_258537127.1 DUF3310 domain-containing protein -
  HSZ49_RS09350 (HSZ49_09350) - 1922381..1922761 (-) 381 WP_174544042.1 hypothetical protein -
  HSZ49_RS09355 (HSZ49_09355) - 1922775..1922978 (-) 204 WP_174544043.1 hypothetical protein -
  HSZ49_RS09360 (HSZ49_09360) - 1922938..1923381 (-) 444 WP_174544044.1 RusA family crossover junction endodeoxyribonuclease -
  HSZ49_RS13165 - 1923382..1923543 (-) 162 WP_258537128.1 hypothetical protein -
  HSZ49_RS09365 (HSZ49_09365) - 1923540..1924325 (-) 786 WP_174544045.1 ATP-binding protein -
  HSZ49_RS09370 (HSZ49_09370) - 1924337..1925128 (-) 792 WP_174544046.1 phage replisome organizer N-terminal domain-containing protein -
  HSZ49_RS09375 (HSZ49_09375) - 1925082..1925366 (-) 285 WP_174544047.1 XRE family transcriptional regulator -
  HSZ49_RS09380 (HSZ49_09380) - 1925363..1926031 (-) 669 WP_174544048.1 putative HNHc nuclease -
  HSZ49_RS09385 (HSZ49_09385) ssbA 1926045..1926446 (-) 402 WP_174544049.1 single-stranded DNA-binding protein Machinery gene
  HSZ49_RS09390 (HSZ49_09390) - 1926443..1927066 (-) 624 WP_174544050.1 DUF1071 domain-containing protein -
  HSZ49_RS09395 (HSZ49_09395) - 1927059..1927319 (-) 261 WP_174544051.1 hypothetical protein -
  HSZ49_RS09400 (HSZ49_09400) - 1927381..1927554 (-) 174 WP_174544052.1 hypothetical protein -
  HSZ49_RS09405 (HSZ49_09405) - 1927556..1927870 (-) 315 WP_174544053.1 DUF771 domain-containing protein -
  HSZ49_RS09410 (HSZ49_09410) - 1927920..1928477 (-) 558 WP_174544054.1 ORF6C domain-containing protein -
  HSZ49_RS09415 (HSZ49_09415) - 1928470..1929450 (-) 981 WP_174544055.1 hypothetical protein -
  HSZ49_RS09420 (HSZ49_09420) - 1929466..1929681 (-) 216 WP_174544056.1 helix-turn-helix transcriptional regulator -
  HSZ49_RS09425 (HSZ49_09425) - 1929880..1930503 (+) 624 WP_174544057.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15059.70 Da        Isoelectric Point: 6.3861

>NTDB_id=452506 HSZ49_RS09385 WP_174544049.1 1926045..1926446(-) (ssbA) [Staphylococcus saprophyticus strain UTI-042y]
MINRVVLVGRLTKDPEFRTTPSGVNVTNFTLAVNRTFTNAQGEREADFINVVVFRKQAENVNKYLFKGNLAGVDGRIQSR
SYENNEGKRVFITEVVADNVQFLEPKNTNSNQQSSKQANAFDNNDIDDRDLPF

Nucleotide


Download         Length: 402 bp        

>NTDB_id=452506 HSZ49_RS09385 WP_174544049.1 1926045..1926446(-) (ssbA) [Staphylococcus saprophyticus strain UTI-042y]
ATGATAAACAGAGTCGTATTAGTAGGTAGATTAACAAAAGATCCAGAATTCAGAACAACACCATCAGGCGTTAATGTTAC
TAATTTCACATTAGCAGTTAATAGAACTTTCACAAATGCTCAAGGTGAACGCGAAGCAGATTTTATAAATGTAGTTGTAT
TTAGAAAGCAAGCAGAAAATGTAAATAAATATTTATTTAAAGGTAATTTAGCTGGGGTTGATGGTCGTATACAATCACGA
AGTTATGAAAACAATGAAGGGAAACGAGTGTTTATTACAGAAGTTGTAGCAGATAATGTTCAATTTTTAGAACCTAAAAA
TACTAATAGTAATCAACAGTCATCTAAACAAGCGAACGCTTTTGATAACAATGATATAGATGACCGAGATTTGCCATTCT
GA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.907

100

0.684
  ssb Latilactobacillus sakei subsp. sakei 23K

48.235

100

0.617
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

79.699

0.474
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.382

100

0.444
  ssbA Streptococcus mutans UA159

38.346

100

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

37.5

100

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.5

100

0.383
  ssbB/cilA Streptococcus pneumoniae Rx1

36.765

100

0.376
  ssbB/cilA Streptococcus pneumoniae D39

36.765

100

0.376
  ssbB/cilA Streptococcus pneumoniae R6

36.765

100

0.376
  ssbB/cilA Streptococcus mitis SK321

36.765

100

0.376