Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HTY51_RS13345 Genome accession   NZ_CP054424
Coordinates   2779772..2780989 (+) Length   405 a.a.
NCBI ID   WP_174253179.1    Uniprot ID   A0A6N0BTJ9
Organism   Rhodoferax sp. BAB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2774772..2785989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY51_RS13315 (HTY51_13315) cgtA 2774772..2775848 (-) 1077 WP_057673746.1 Obg family GTPase CgtA -
  HTY51_RS13320 (HTY51_13320) rpmA 2775989..2776246 (-) 258 WP_057673747.1 50S ribosomal protein L27 -
  HTY51_RS13325 (HTY51_13325) rplU 2776259..2776570 (-) 312 WP_082605348.1 50S ribosomal protein L21 -
  HTY51_RS13330 (HTY51_13330) - 2776781..2777710 (+) 930 WP_174254282.1 polyprenyl synthetase family protein -
  HTY51_RS13340 (HTY51_13340) pilB 2778011..2779747 (+) 1737 WP_174253178.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HTY51_RS13345 (HTY51_13345) pilC 2779772..2780989 (+) 1218 WP_174253179.1 type II secretion system F family protein Machinery gene
  HTY51_RS13350 (HTY51_13350) pilD 2780989..2781831 (+) 843 WP_174253180.1 A24 family peptidase Machinery gene
  HTY51_RS13355 (HTY51_13355) coaE 2781835..2782443 (+) 609 WP_174253181.1 dephospho-CoA kinase -
  HTY51_RS13360 (HTY51_13360) zapD 2782466..2783221 (+) 756 WP_174253182.1 cell division protein ZapD -
  HTY51_RS13365 (HTY51_13365) - 2783251..2783469 (+) 219 WP_057673754.1 DNA gyrase inhibitor YacG -
  HTY51_RS13370 (HTY51_13370) - 2783485..2783961 (-) 477 WP_174253183.1 NUDIX domain-containing protein -
  HTY51_RS13375 (HTY51_13375) - 2783958..2784836 (-) 879 WP_174253184.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44496.38 Da        Isoelectric Point: 9.5547

>NTDB_id=452432 HTY51_RS13345 WP_174253179.1 2779772..2780989(+) (pilC) [Rhodoferax sp. BAB1]
MATAQSKNAKEVVFEWEGKDRNGKMVRGEIRAAGENQVLASLRRQGIMPGKVKKRRMRSGKKITAKDLTLFTRQLATMMK
AGVPLLQAFDIVGRGNANPSVTRLLNDIRNDVETGTSLSTAFRKYPIYFDNLYCNLVEAGEQAGILDQLLDRLAVYMEKT
QAIKSKIKSALMYPISVVVVAFVVVAVIMIFVVPAFKQVFSSFGADLPAPTLMVIAMSEFFVAWWWLIFGGIGGGLYFFF
QAWQRNRKMQQAMDRLMLKIPVFGALIDKSCIARWTRTLSTMFAAGVPLVEALDSVGGAAGNWLYEEATLKIQHEVSTGT
SLTAAMANAHLFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVFLGTIVGGIVVAMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=452432 HTY51_RS13345 WP_174253179.1 2779772..2780989(+) (pilC) [Rhodoferax sp. BAB1]
ATGGCAACAGCACAATCCAAGAACGCCAAGGAAGTGGTCTTCGAGTGGGAAGGCAAGGATCGCAACGGCAAGATGGTGCG
CGGGGAGATACGCGCCGCCGGCGAGAACCAGGTGCTCGCCTCGCTGCGCCGCCAGGGCATCATGCCCGGCAAGGTCAAGA
AACGCCGGATGAGATCCGGCAAGAAGATCACCGCCAAGGACCTGACCCTGTTCACGCGCCAGCTGGCTACCATGATGAAG
GCCGGCGTGCCCCTGCTGCAGGCCTTTGACATCGTGGGTCGCGGCAATGCCAACCCGAGCGTGACACGGCTGCTCAACGA
CATCCGCAACGACGTCGAGACCGGCACATCGTTGAGCACCGCCTTCCGCAAGTACCCGATCTACTTCGACAACCTCTATT
GCAACCTGGTCGAAGCAGGCGAGCAGGCCGGTATCCTGGATCAGCTGCTGGACCGCCTGGCGGTCTACATGGAAAAAACC
CAGGCCATCAAGTCCAAGATCAAGTCGGCGCTGATGTACCCGATCTCGGTGGTCGTGGTGGCCTTCGTTGTGGTCGCCGT
GATCATGATCTTCGTCGTTCCGGCCTTCAAGCAGGTTTTCTCTTCCTTTGGCGCCGACCTGCCAGCCCCGACGCTGATGG
TCATCGCCATGAGTGAATTCTTCGTCGCCTGGTGGTGGCTGATTTTCGGCGGCATCGGCGGCGGCCTCTACTTCTTCTTC
CAGGCCTGGCAGCGCAACCGCAAGATGCAGCAGGCCATGGATCGGCTGATGTTGAAGATCCCCGTCTTCGGTGCACTGAT
CGATAAATCTTGCATCGCGCGCTGGACCCGCACGCTCTCCACCATGTTCGCGGCCGGTGTGCCACTTGTGGAAGCCCTGG
ACTCCGTGGGCGGTGCCGCAGGCAACTGGCTGTATGAAGAAGCCACCCTCAAGATCCAGCACGAAGTCTCCACCGGCACC
AGCCTGACGGCGGCCATGGCCAATGCGCATCTGTTCCCGAGCATGGTCCTGCAGATGTGTGCCATCGGCGAAGAGTCCGG
CTCGATCGACCACATGCTGGGCAAGGCGGCCGATTTTTATGAAGCCGAGGTGGATGACATGGTCGCCGGCCTCTCCAGCC
TGATGGAACCCATCATCATCGTGTTCCTCGGCACCATCGTCGGTGGCATCGTGGTCGCGATGTACCTCCCCATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0BTJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.975

99.259

0.546
  pilC Legionella pneumophila strain ERS1305867

53.518

98.272

0.526
  pilG Neisseria gonorrhoeae MS11

53.149

98.025

0.521
  pilG Neisseria meningitidis 44/76-A

52.897

98.025

0.519
  pilC Acinetobacter baylyi ADP1

49.497

98.272

0.486
  pilC Acinetobacter baumannii D1279779

49.37

98.025

0.484
  pilC Vibrio cholerae strain A1552

41

98.765

0.405
  pilC Thermus thermophilus HB27

40.447

99.506

0.402
  pilC Vibrio campbellii strain DS40M4

39.303

99.259

0.39