Detailed information NTG0452433

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HTY51_RS13350
• Genome accession: NZ_CP054424
• Coordinates: 2780989..2781831 (+)
• Length: 280 a.a.
• NCBI ID: WP_174253180.1
• Uniprot ID: -
• Organism: Rhodoferax sp. BAB1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2775989..2786831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HTY51_RS13320 (HTY51_13320)	rpmA	2775989..2776246 (-)	258	WP_057673747.1	50S ribosomal protein L27	-
HTY51_RS13325 (HTY51_13325)	rplU	2776259..2776570 (-)	312	WP_082605348.1	50S ribosomal protein L21	-
HTY51_RS13330 (HTY51_13330)	-	2776781..2777710 (+)	930	WP_174254282.1	polyprenyl synthetase family protein	-
HTY51_RS13340 (HTY51_13340)	pilB	2778011..2779747 (+)	1737	WP_174253178.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HTY51_RS13345 (HTY51_13345)	pilC	2779772..2780989 (+)	1218	WP_174253179.1	type II secretion system F family protein	Machinery gene
HTY51_RS13350 (HTY51_13350)	pilD	2780989..2781831 (+)	843	WP_174253180.1	A24 family peptidase	Machinery gene
HTY51_RS13355 (HTY51_13355)	coaE	2781835..2782443 (+)	609	WP_174253181.1	dephospho-CoA kinase	-
HTY51_RS13360 (HTY51_13360)	zapD	2782466..2783221 (+)	756	WP_174253182.1	cell division protein ZapD	-
HTY51_RS13365 (HTY51_13365)	-	2783251..2783469 (+)	219	WP_057673754.1	DNA gyrase inhibitor YacG	-
HTY51_RS13370 (HTY51_13370)	-	2783485..2783961 (-)	477	WP_174253183.1	NUDIX domain-containing protein	-
HTY51_RS13375 (HTY51_13375)	-	2783958..2784836 (-)	879	WP_174253184.1	ATP-binding protein	-
HTY51_RS13380 (HTY51_13380)	argJ	2784842..2786071 (-)	1230	WP_174253185.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 280 a.a.
• Molecular weight: 30427.03 Da
• Isoelectric Point: 7.8688

>NTDB_id=452433 HTY51_RS13350 WP_174253180.1 2780989..2781831(+) (pilD) [Rhodoferax sp. BAB1]
MLVSQVFDAGLAGVLGLMIGSFLNVVIYRLPKIMERQWAEECAELAGKDLPQTETFNLVLPRSRCQKCGHQIRWHENIPV
LSYLFLRGKCSACSTPISPRYPLVELTTGALFFYCVWSWGATPMGLVWCGFSAAIVALALIDWDTTLLPDSITQPLLWAG
LIAATLKWNNVPLADALWGAVAGYLALWLVYWSFKLVTGKEGMGFGDFKLYAALGAWFGWTALVPIILMASVIGAIIGIA
LKFSAGLREGGYVPFGPFLAAAGLTAMIFGPQSILRSVGL

Nucleotide

• Length: 843 bp

>NTDB_id=452433 HTY51_RS13350 WP_174253180.1 2780989..2781831(+) (pilD) [Rhodoferax sp. BAB1]
ATGCTGGTCTCGCAGGTGTTTGATGCCGGCCTGGCCGGCGTGCTGGGGCTGATGATCGGCAGTTTCCTCAATGTGGTGAT
CTACCGCCTGCCAAAAATCATGGAACGGCAGTGGGCTGAAGAGTGCGCCGAACTCGCCGGCAAGGACTTGCCGCAGACGG
AAACCTTCAACCTGGTGCTGCCGCGTTCACGTTGCCAGAAGTGCGGCCATCAGATCCGCTGGCACGAAAACATCCCCGTG
CTGAGCTACCTCTTTCTGCGTGGCAAATGCTCGGCCTGCAGCACGCCGATCAGCCCGCGCTATCCCTTGGTCGAATTGAC
CACCGGCGCCCTGTTCTTCTACTGTGTCTGGAGCTGGGGTGCCACCCCGATGGGTCTGGTCTGGTGTGGTTTCTCGGCGG
CCATCGTCGCCCTGGCCCTGATCGACTGGGACACCACGCTGTTACCCGACAGCATCACCCAGCCCCTGCTCTGGGCCGGC
CTCATCGCGGCGACACTGAAATGGAACAACGTGCCCTTGGCAGACGCCCTCTGGGGCGCCGTCGCCGGCTATCTGGCCTT
GTGGCTGGTGTACTGGAGCTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGGTTTGGCGATTTCAAGCTCTATGCGGCCC
TGGGGGCCTGGTTCGGCTGGACCGCACTGGTGCCCATCATCCTGATGGCCTCAGTGATCGGCGCCATCATCGGCATCGCC
CTGAAATTCAGCGCTGGCTTGCGTGAAGGCGGCTATGTGCCTTTCGGCCCCTTTCTGGCTGCCGCCGGGCTGACCGCCAT
GATCTTCGGGCCGCAAAGCATCCTGCGTTCTGTCGGGCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-118)

• Type IV leader peptidase family (Peptidase_A24) (133-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.698	94.643	0.489
pilD	Vibrio cholerae strain A1552	50.373	95.714	0.482
pilD	Neisseria gonorrhoeae MS11	49.615	92.857	0.461
pilD	Acinetobacter baumannii D1279779	46.97	94.286	0.443
pilD	Acinetobacter nosocomialis M2	46.212	94.286	0.436