Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HRJ47_RS01665 Genome accession   NZ_CP054137
Coordinates   350415..351224 (+) Length   269 a.a.
NCBI ID   WP_068526925.1    Uniprot ID   A0AAW8QIA9
Organism   Acinetobacter pittii strain JXA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345415..356224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS01630 (HRJ47_01630) - 345973..346128 (-) 156 WP_014207816.1 hypothetical protein -
  HRJ47_RS01635 (HRJ47_01635) rpoZ 346167..346445 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  HRJ47_RS01640 (HRJ47_01640) gmk 346518..347147 (-) 630 WP_005804544.1 guanylate kinase -
  HRJ47_RS01645 (HRJ47_01645) ispH 347270..348220 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HRJ47_RS01650 (HRJ47_01650) fimU 348390..348863 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  HRJ47_RS01655 (HRJ47_01655) pilV 348857..349417 (+) 561 WP_203080014.1 type IV pilus modification protein PilV Machinery gene
  HRJ47_RS01660 (HRJ47_01660) pilW 349417..350418 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  HRJ47_RS01665 (HRJ47_01665) pilX 350415..351224 (+) 810 WP_068526925.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HRJ47_RS01670 (HRJ47_01670) pilY1 351317..355384 (+) 4068 WP_416378520.1 pilus assembly protein Machinery gene
  HRJ47_RS01675 (HRJ47_01675) pilY2 355395..355877 (+) 483 WP_150378059.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28449.20 Da        Isoelectric Point: 6.8457

>NTDB_id=451031 HRJ47_RS01665 WP_068526925.1 350415..351224(+) (pilX) [Acinetobacter pittii strain JXA13]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQSDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=451031 HRJ47_RS01665 WP_068526925.1 350415..351224(+) (pilX) [Acinetobacter pittii strain JXA13]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGTCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACCAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTTGAAGATGGCGGAGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCTGGCTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGCG
ATTGCTTAAGCACAAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914