Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   HRJ47_RS01670 Genome accession   NZ_CP054137
Coordinates   351317..355384 (+) Length   1355 a.a.
NCBI ID   WP_416378520.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346317..360384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS01640 (HRJ47_01640) gmk 346518..347147 (-) 630 WP_005804544.1 guanylate kinase -
  HRJ47_RS01645 (HRJ47_01645) ispH 347270..348220 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HRJ47_RS01650 (HRJ47_01650) fimU 348390..348863 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  HRJ47_RS01655 (HRJ47_01655) pilV 348857..349417 (+) 561 WP_203080014.1 type IV pilus modification protein PilV Machinery gene
  HRJ47_RS01660 (HRJ47_01660) pilW 349417..350418 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  HRJ47_RS01665 (HRJ47_01665) pilX 350415..351224 (+) 810 WP_068526925.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HRJ47_RS01670 (HRJ47_01670) pilY1 351317..355384 (+) 4068 WP_416378520.1 pilus assembly protein Machinery gene
  HRJ47_RS01675 (HRJ47_01675) pilY2 355395..355877 (+) 483 WP_150378059.1 type IV pilin protein Machinery gene
  HRJ47_RS01680 (HRJ47_01680) pilE 355874..356299 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  HRJ47_RS01685 (HRJ47_01685) rpsP 356447..356698 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HRJ47_RS01690 (HRJ47_01690) rimM 356719..357267 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  HRJ47_RS01695 (HRJ47_01695) trmD 357310..358065 (+) 756 WP_086399354.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HRJ47_RS01700 (HRJ47_01700) rplS 358285..358653 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  HRJ47_RS01705 (HRJ47_01705) lip 358706..359647 (-) 942 WP_080777126.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 1355 a.a.        Molecular weight: 145028.00 Da        Isoelectric Point: 6.3087

>NTDB_id=451032 HRJ47_RS01670 WP_416378520.1 351317..355384(+) (pilY1) [Acinetobacter pittii strain JXA13]
MTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMGVNSSSNSINADYGVCSDRTTVQTDSGGSGSYTYSRTYCSVAYSTS
TSSNYQRLKDKCYNPNKNADGSYSARTDSLKCYDRISRLKDGMFAFLDSNNSSLTNVRVGLGHYSVNGSGNAGKILVPAA
TLGATNSTQRNAIRTAVMGLTASGGTPTAAAYAEAAAYLMGTTTNAPVQIAVDVYRKEETRSISSYQCPSSSYPYLRTNV
APPLCYERYESWRSQPYRGNSTEAIPVYGPIITTYYRCDSLNATDFSNEIQTCRFNGWVSLGGTAPSNLAQDGYYTDGNN
TIYYKQEMQLGANSYSGFSSSISDSKKADLLSYASPLPAAADRVSCDGQGVYILSDGEPTNKTDSTLNSVMNASLSSTNF
DCAASGALSSTNDWHCMSNYAKRLFNGGVIQSIVANATNPVNVPIQTAFVGFGNDFTSLGSSDVVNACKLTSRTQTDRAG
DDACSPNQGTNAIANPGYGNGGFFATQTPQGVTDSVIAFINNLGAAPLAPLTTGVISVPYDALNPKNLQEYGYLRAFEPN
PANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVPLPIAGQNET
RDEEGNITKYYYAVQTKIRNLFTDVSAVASDGSLTKLSTSGTNLLKIPATPPEGTNPFDSVANTASYVLGKFNASTGQDI
LKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQSILYGTMEGG
LHIVDASTGVEQMAFVPADILNNPVASKALVVGQSDASAPAHGMDGAWISDPAYSITTTVSGSSAVSKVTAKQMNIYGGM
RMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNITLSNSCFTN
GKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLNNNQTKTNST
YSSFGIRVVRLANLATNDSTYDASNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLTGREGMSPST
ALSGRPVNNVYGIIDKDFIKKNLMFLTDSQLETKDITRSTLRKNPQILRSGETRVAQIFFPNTGTGQNGWYRSLSSMSDG
TEKANNSFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGSIDQNKENHS
GFETQTGNTCPVGVSECNENVIGSGIRGVTFVPTEDNPPATNSCGKLKLSGNEQGTGQWQCTSHLVPTRWYERYR

Nucleotide


Download         Length: 4068 bp        

>NTDB_id=451032 HRJ47_RS01670 WP_416378520.1 351317..355384(+) (pilY1) [Acinetobacter pittii strain JXA13]
ATGACAAGCTCCGTGGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCGGGTAAAAAAACCATTGTGATGAT
GTTGGATACCTCCGGTTCAATGGGGGTAAATAGTAGTAGTAATTCAATTAATGCAGATTATGGAGTGTGTTCAGATCGTA
CAACTGTGCAAACTGATAGTGGAGGGAGCGGGTCGTATACATATTCCAGAACGTACTGCTCGGTGGCTTATTCGACTTCA
ACTTCGTCGAATTATCAAAGATTAAAGGACAAGTGTTACAATCCTAATAAAAATGCTGATGGTAGTTATAGCGCTCGAAC
AGATTCCTTGAAATGCTATGATCGAATATCAAGGCTAAAGGATGGTATGTTTGCATTTTTGGATAGTAATAACTCCAGCT
TAACAAATGTCCGGGTGGGATTGGGTCATTATTCCGTCAATGGGTCAGGAAATGCAGGAAAGATATTAGTACCAGCCGCT
ACTCTTGGTGCTACTAATTCAACCCAAAGGAATGCTATACGTACAGCTGTGATGGGGCTGACTGCAAGTGGAGGAACACC
TACAGCCGCTGCATATGCTGAAGCAGCTGCATATTTGATGGGAACAACAACTAACGCACCAGTACAAATTGCAGTTGATG
TTTATAGAAAGGAAGAAACAAGAAGTATAAGTAGTTATCAATGTCCTAGCAGCAGCTATCCTTATTTGAGAACCAATGTG
GCACCGCCGCTTTGCTATGAAAGATATGAGTCTTGGAGATCTCAACCATATCGAGGTAATAGTACCGAAGCTATACCAGT
ATATGGTCCTATTATAACTACTTACTATAGATGTGATAGCTTGAATGCTACAGATTTTAGTAATGAAATACAGACTTGTC
GTTTTAATGGTTGGGTTTCTTTAGGGGGAACGGCTCCATCTAATCTTGCTCAAGATGGTTATTATACTGACGGAAACAAT
ACTATTTATTACAAACAGGAAATGCAACTAGGAGCTAACTCGTATAGTGGTTTTAGTAGTTCTATTTCTGACTCTAAAAA
AGCAGACTTACTTAGTTACGCCTCACCACTGCCAGCGGCTGCTGATCGAGTAAGTTGTGATGGTCAAGGAGTTTATATTC
TATCTGATGGTGAGCCGACAAATAAGACTGATTCGACCCTTAATTCTGTTATGAATGCTAGTCTGAGTAGTACGAATTTT
GATTGCGCTGCATCAGGTGCACTAAGTAGTACTAACGATTGGCATTGTATGAGTAACTATGCGAAAAGACTTTTTAATGG
TGGTGTAATCCAAAGCATAGTTGCTAATGCGACGAATCCTGTCAATGTTCCCATACAAACTGCTTTTGTGGGTTTTGGTA
ATGACTTTACAAGTTTAGGATCTAGTGATGTCGTTAATGCATGTAAATTGACATCCCGAACTCAAACAGATCGCGCAGGT
GATGATGCTTGTTCGCCGAATCAAGGAACAAACGCAATTGCTAATCCAGGTTATGGTAATGGAGGGTTTTTTGCAACGCA
AACACCACAAGGTGTGACTGATAGTGTTATCGCATTTATTAATAACTTGGGTGCAGCACCTTTAGCACCGTTAACAACAG
GTGTGATCTCTGTTCCTTATGATGCACTAAATCCTAAAAATTTACAGGAATATGGTTACTTACGTGCTTTTGAGCCAAAC
CCGGCTAACACCTACTTAACATGGCGAGGAAATTTAAAGAAATATCATGTTGTTTTATCGGGAACAAATGCTGGTGCTTT
TGAAGCTAATACTGGTGGGTTGGTTTATAACGCAACTGGGGCATTTAGAACGGGTACAAAAGATTATTGGAATAGCTCTA
CTTATAATGATGGAGGTAAAGTCTTTTTTGGCGGTTCATATGCAAAAGTTCCTTTACCAATTGCTGGACAAAATGAAACA
CGCGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAATCCGCAACTTATTTACTGATGTTTCCGC
CGTCGCATCAGATGGTAGCTTAACGAAGCTATCAACTTCTGGAACTAATTTGCTAAAAATTCCAGCTACTCCACCAGAAG
GAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAATTTAATGCATCAACGGGACAAGATATT
TTAAAAGCTTTCCCAATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTACTCAACTGATATTAGCGCTACGACTTT
ACCTTCTTCATTAGTTACATCGAATGAACCATATTTATCGATGGGCGGTAGTATTCACTCTTTACCGGTACAGCTTACCT
ATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCCATTCTCTATGGAACGATGGAAGGTGGT
CTGCATATTGTGGATGCCTCAACTGGTGTAGAACAAATGGCTTTCGTTCCCGCTGATATATTAAATAATCCAGTTGCATC
AAAAGCTTTAGTGGTTGGTCAAAGTGATGCTTCAGCCCCTGCTCACGGTATGGATGGAGCTTGGATATCTGACCCTGCAT
ATAGTATTACTACAACGGTAAGCGGTAGTTCAGCAGTATCAAAAGTAACTGCAAAGCAAATGAATATTTATGGTGGTATG
CGAATGGGGGGCAGCAGTTATTATGGCTTAAATGTCTTAAATCCTGCTTCACCTAAGCTCCTCTTTAGAGTAGGAGCAGA
CCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAAATATACGTTATAACGGGGTGATTAAAC
GGGTCATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATTACCTTGAGTAACTCTTGCTTTACGAAT
GGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGAGAGCGCTTATGGTGGACTAGTGATACAGGCTC
TAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCTTGGATCGAGATGCTGATGGTTTGGTAG
ACCATTTATACTTTGGCGATTTAGGCGGACAAATTTTCCGTATCGATCTTAATAATAACCAGACAAAAACAAATTCAACT
TATAGCAGTTTCGGTATTCGAGTTGTTCGATTAGCCAATTTAGCAACGAATGACTCAACTTATGATGCCTCGAACGACTA
TACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCATGATTATGGAATCCGCACTTTTATTACTG
TCGGTATTGCTTCAGGTGACCGTAGTACACCTTTAGATGTTTATCCGCTTACAGGTCGTGAGGGGATGTCACCGAGCACA
GCATTAAGCGGAAGACCTGTAAACAACGTTTATGGAATTATCGACAAAGACTTTATTAAAAAGAATTTAATGTTTTTAAC
AGATAGCCAGCTTGAAACGAAAGATATTACTCGATCAACGCTTCGAAAAAATCCACAAATTTTACGGTCTGGGGAAACAC
GAGTAGCACAGATTTTCTTTCCAAACACTGGGACGGGACAAAACGGTTGGTATCGCTCGCTTTCTAGTATGAGCGATGGC
ACAGAGAAAGCTAATAATAGTTTCCGTATTAAAGGTGGACTGAAAGCTTTTGAAGAGCCTATGGCAATTACAGGGACTTT
AATTGTGCCTGTTTATGATCCACAGGGAACAGGTATTGTAGCGGCAGACCCATGTTTACCCCGTGTAGTAGGTGAAACTG
ACCAGCAGACGTTCTGTTTACCATTTGGCGCGTGCCTTAATTCTGATGGGTCAATCGATCAAAATAAAGAGAATCACAGT
GGGTTTGAAACACAAACGGGGAATACCTGCCCAGTAGGAGTTTCTGAATGTAATGAAAATGTTATTGGCTCTGGTATTCG
TGGCGTAACATTTGTACCAACGGAGGATAACCCACCTGCGACTAATAGTTGTGGGAAATTAAAGCTGTCTGGTAATGAGC
AAGGGACTGGACAGTGGCAATGTACGAGTCATTTAGTTCCTACGCGTTGGTATGAGCGTTATCGTTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(786-1036)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

75.789

93.579

0.709