Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HRJ47_RS01675 Genome accession   NZ_CP054137
Coordinates   355395..355877 (+) Length   160 a.a.
NCBI ID   WP_150378059.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350395..360877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS01665 (HRJ47_01665) pilX 350415..351224 (+) 810 WP_068526925.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HRJ47_RS01670 (HRJ47_01670) pilY1 351317..355384 (+) 4068 WP_416378520.1 pilus assembly protein Machinery gene
  HRJ47_RS01675 (HRJ47_01675) pilY2 355395..355877 (+) 483 WP_150378059.1 type IV pilin protein Machinery gene
  HRJ47_RS01680 (HRJ47_01680) pilE 355874..356299 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  HRJ47_RS01685 (HRJ47_01685) rpsP 356447..356698 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HRJ47_RS01690 (HRJ47_01690) rimM 356719..357267 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  HRJ47_RS01695 (HRJ47_01695) trmD 357310..358065 (+) 756 WP_086399354.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HRJ47_RS01700 (HRJ47_01700) rplS 358285..358653 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  HRJ47_RS01705 (HRJ47_01705) lip 358706..359647 (-) 942 WP_080777126.1 lipase family alpha/beta hydrolase -
  HRJ47_RS01710 (HRJ47_01710) - 359763..360794 (-) 1032 WP_086399353.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17535.81 Da        Isoelectric Point: 8.4721

>NTDB_id=451033 HRJ47_RS01675 WP_150378059.1 355395..355877(+) (pilY2) [Acinetobacter pittii strain JXA13]
MNKYYVLRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTESRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=451033 HRJ47_RS01675 WP_150378059.1 355395..355877(+) (pilY2) [Acinetobacter pittii strain JXA13]
ATGAATAAATATTATGTTCTGCGGTTTAATCAGGGGGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGAGTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACAGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.698

100

0.438