Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HRJ47_RS01650 Genome accession   NZ_CP054137
Coordinates   348390..348863 (+) Length   157 a.a.
NCBI ID   WP_005067119.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343390..353863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS01625 (HRJ47_01625) spoT 343852..345957 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  HRJ47_RS01630 (HRJ47_01630) - 345973..346128 (-) 156 WP_014207816.1 hypothetical protein -
  HRJ47_RS01635 (HRJ47_01635) rpoZ 346167..346445 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  HRJ47_RS01640 (HRJ47_01640) gmk 346518..347147 (-) 630 WP_005804544.1 guanylate kinase -
  HRJ47_RS01645 (HRJ47_01645) ispH 347270..348220 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HRJ47_RS01650 (HRJ47_01650) fimU 348390..348863 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  HRJ47_RS01655 (HRJ47_01655) pilV 348857..349417 (+) 561 WP_203080014.1 type IV pilus modification protein PilV Machinery gene
  HRJ47_RS01660 (HRJ47_01660) pilW 349417..350418 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  HRJ47_RS01665 (HRJ47_01665) pilX 350415..351224 (+) 810 WP_068526925.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=451028 HRJ47_RS01650 WP_005067119.1 348390..348863(+) (fimU) [Acinetobacter pittii strain JXA13]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=451028 HRJ47_RS01650 WP_005067119.1 348390..348863(+) (fimU) [Acinetobacter pittii strain JXA13]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAATCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTAATAACCAATATCACCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885