Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HQ612_RS01200 | Genome accession | NZ_CP054054 |
| Coordinates | 199359..199754 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain SS111 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 193100..232268 | 199359..199754 | within | 0 |
Gene organization within MGE regions
Location: 193100..232268
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQ612_RS01145 (HQ612_01145) | - | 193100..193306 (+) | 207 | WP_000798241.1 | helix-turn-helix transcriptional regulator | - |
| HQ612_RS01150 (HQ612_01150) | - | 193365..193502 (+) | 138 | WP_001865900.1 | hypothetical protein | - |
| HQ612_RS01155 (HQ612_01155) | - | 193543..193998 (+) | 456 | WP_000905673.1 | hypothetical protein | - |
| HQ612_RS01160 (HQ612_01160) | - | 194067..194732 (+) | 666 | WP_000008113.1 | CPBP family intramembrane glutamic endopeptidase | - |
| HQ612_RS01165 (HQ612_01165) | proC | 194753..195523 (-) | 771 | WP_001865901.1 | pyrroline-5-carboxylate reductase | - |
| HQ612_RS01170 (HQ612_01170) | pepA | 195593..196660 (-) | 1068 | WP_001281323.1 | glutamyl aminopeptidase | - |
| HQ612_RS01175 (HQ612_01175) | - | 196845..197084 (-) | 240 | WP_000660180.1 | hypothetical protein | - |
| HQ612_RS01180 (HQ612_01180) | - | 197245..197529 (+) | 285 | WP_000791272.1 | DUF4651 domain-containing protein | - |
| HQ612_RS01185 (HQ612_01185) | - | 197526..197849 (+) | 324 | WP_000602781.1 | thioredoxin family protein | - |
| HQ612_RS01190 (HQ612_01190) | ytpR | 197882..198508 (+) | 627 | WP_000578328.1 | YtpR family tRNA-binding protein | - |
| HQ612_RS01195 (HQ612_01195) | - | 198562..199278 (-) | 717 | WP_000186185.1 | class I SAM-dependent methyltransferase | - |
| HQ612_RS01200 (HQ612_01200) | ssbA | 199359..199754 (+) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| HQ612_RS01205 (HQ612_01205) | - | 199878..200522 (+) | 645 | WP_000416612.1 | HAD family phosphatase | - |
| HQ612_RS01210 (HQ612_01210) | - | 200549..202294 (+) | 1746 | WP_000930334.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| HQ612_RS01215 (HQ612_01215) | - | 202275..203015 (+) | 741 | WP_000697630.1 | LytTR family DNA-binding domain-containing protein | - |
| HQ612_RS01220 (HQ612_01220) | - | 203185..203640 (+) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| HQ612_RS01225 (HQ612_01225) | lrgB | 203642..204370 (+) | 729 | WP_000421726.1 | antiholin-like protein LrgB | - |
| HQ612_RS01230 (HQ612_01230) | - | 204613..206241 (+) | 1629 | WP_000170504.1 | ABC transporter substrate-binding protein | - |
| HQ612_RS01235 (HQ612_01235) | - | 206354..207331 (+) | 978 | WP_000680645.1 | ABC transporter permease | - |
| HQ612_RS01240 (HQ612_01240) | - | 207328..208149 (+) | 822 | WP_000603397.1 | ABC transporter permease | - |
| HQ612_RS01245 (HQ612_01245) | - | 208161..208964 (+) | 804 | WP_000140984.1 | ABC transporter ATP-binding protein | - |
| HQ612_RS01250 (HQ612_01250) | - | 208948..209574 (+) | 627 | WP_000171311.1 | ABC transporter ATP-binding protein | - |
| HQ612_RS01255 (HQ612_01255) | treP | 209857..211887 (+) | 2031 | WP_000434616.1 | PTS system trehalose-specific EIIBC component | - |
| HQ612_RS01260 (HQ612_01260) | treC | 212109..213734 (+) | 1626 | WP_000151017.1 | alpha,alpha-phosphotrehalase | - |
| HQ612_RS01265 (HQ612_01265) | - | 213950..215986 (+) | 2037 | WP_235075703.1 | BglG family transcription antiterminator | - |
| HQ612_RS01270 (HQ612_01270) | - | 215989..216273 (+) | 285 | WP_000944235.1 | PTS sugar transporter subunit IIB | - |
| HQ612_RS01275 (HQ612_01275) | - | 216286..217641 (+) | 1356 | WP_000677351.1 | PTS ascorbate transporter subunit IIC | - |
| HQ612_RS01280 (HQ612_01280) | - | 217644..218501 (+) | 858 | WP_000203489.1 | transketolase | - |
| HQ612_RS01285 (HQ612_01285) | - | 218498..219427 (+) | 930 | WP_001203821.1 | transketolase family protein | - |
| HQ612_RS01290 (HQ612_01290) | - | 219536..220795 (+) | 1260 | WP_001203071.1 | ferric reductase-like transmembrane domain-containing protein | - |
| HQ612_RS01295 (HQ612_01295) | rpsO | 220883..221152 (+) | 270 | WP_001018249.1 | 30S ribosomal protein S15 | - |
| HQ612_RS01300 (HQ612_01300) | pnp | 221533..223662 (+) | 2130 | WP_000043850.1 | polyribonucleotide nucleotidyltransferase | - |
| HQ612_RS01305 (HQ612_01305) | - | 223664..224416 (+) | 753 | WP_000204782.1 | SseB family protein | - |
| HQ612_RS01310 (HQ612_01310) | cysE | 224425..225009 (+) | 585 | WP_000539954.1 | serine O-acetyltransferase | - |
| HQ612_RS01315 (HQ612_01315) | - | 225019..225201 (+) | 183 | WP_000656476.1 | lipoprotein | - |
| HQ612_RS01320 (HQ612_01320) | cysS | 225198..226541 (+) | 1344 | WP_000591125.1 | cysteine--tRNA ligase | - |
| HQ612_RS01325 (HQ612_01325) | - | 226534..226920 (+) | 387 | WP_029140668.1 | Mini-ribonuclease 3 | - |
| HQ612_RS01330 (HQ612_01330) | rlmB | 227023..227778 (+) | 756 | WP_000178026.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| HQ612_RS01335 (HQ612_01335) | - | 227775..228293 (+) | 519 | WP_000716636.1 | NYN domain-containing protein | - |
| HQ612_RS01340 (HQ612_01340) | - | 228386..229246 (+) | 861 | WP_000143135.1 | DegV family protein | - |
| HQ612_RS01345 | - | 229783..229902 (+) | 120 | Protein_209 | helix-turn-helix transcriptional regulator | - |
| HQ612_RS01350 (HQ612_01345) | rplM | 230127..230573 (+) | 447 | WP_001865567.1 | 50S ribosomal protein L13 | - |
| HQ612_RS01355 (HQ612_01350) | rpsI | 230594..230986 (+) | 393 | WP_000035940.1 | 30S ribosomal protein S9 | - |
| HQ612_RS01360 (HQ612_01355) | - | 231114..232268 (-) | 1155 | WP_000022165.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=450361 HQ612_RS01200 WP_000282447.1 199359..199754(+) (ssbA) [Streptococcus agalactiae strain SS111]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=450361 HQ612_RS01200 WP_000282447.1 199359..199754(+) (ssbA) [Streptococcus agalactiae strain SS111]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |