Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FOC63_RS04690 Genome accession   NZ_CP054015
Coordinates   918610..919005 (+) Length   131 a.a.
NCBI ID   WP_009853250.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 913610..924005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS04650 (FOC63_04650) - 913755..914393 (+) 639 WP_009853241.1 CPBP family intramembrane glutamic endopeptidase -
  FOC63_RS04655 (FOC63_04655) proC 914453..915223 (-) 771 WP_009853242.1 pyrroline-5-carboxylate reductase -
  FOC63_RS04660 (FOC63_04660) pepA 915284..916351 (-) 1068 WP_009853243.1 glutamyl aminopeptidase -
  FOC63_RS04665 (FOC63_04665) - 916469..916642 (+) 174 WP_012961333.1 hypothetical protein -
  FOC63_RS04670 (FOC63_04670) - 916630..916761 (+) 132 WP_009853245.1 DUF4651 domain-containing protein -
  FOC63_RS04675 (FOC63_04675) - 916754..917071 (+) 318 WP_009853246.1 thioredoxin family protein -
  FOC63_RS04680 (FOC63_04680) ytpR 917080..917706 (+) 627 WP_009853247.1 YtpR family tRNA-binding protein -
  FOC63_RS04685 (FOC63_04685) - 917793..918498 (-) 706 Protein_878 class I SAM-dependent methyltransferase -
  FOC63_RS04690 (FOC63_04690) ssbA 918610..919005 (+) 396 WP_009853250.1 single-stranded DNA-binding protein Machinery gene
  FOC63_RS04695 (FOC63_04695) - 919155..920198 (+) 1044 WP_009853251.1 YeeE/YedE family protein -
  FOC63_RS04700 (FOC63_04700) - 920201..920428 (+) 228 WP_009853252.1 sulfurtransferase TusA family protein -
  FOC63_RS04705 (FOC63_04705) - 920556..921356 (+) 801 WP_009853253.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14845.81 Da        Isoelectric Point: 5.7916

>NTDB_id=450149 FOC63_RS04690 WP_009853250.1 918610..919005(+) (ssbA) [Streptococcus gallolyticus strain FDAARGOS_755]
MYNKVIIIGRLTAQPELVTTSNEKSVTRVTLAVNRRFKSQNGEREADFISVVVWGRLAETLVSYAGKGSLLSVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=450149 FOC63_RS04690 WP_009853250.1 918610..919005(+) (ssbA) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGTACAATAAAGTTATTATAATCGGGCGCTTGACAGCGCAGCCTGAGCTTGTGACGACGTCAAATGAAAAATCTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCACAAAATGGTGAGCGTGAGGCGGATTTTATTTCAGTTGTGGTTT
GGGGACGTTTGGCAGAAACTCTTGTTTCTTATGCTGGAAAAGGTAGTTTGCTTTCAGTAGATGGCGAGCTTCGCACACGC
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCAAACGATCTCGCTGATTTAGTTTTAGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB/cilA Streptococcus mitis NCTC 12261

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

89.313

0.412