Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   FOC71_RS00520 Genome accession   NZ_CP053999
Coordinates   104950..105345 (-) Length   131 a.a.
NCBI ID   WP_003074078.1    Uniprot ID   A0AAE8G3J0
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 99950..110345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS00500 (FOC71_00500) - 100475..101761 (-) 1287 WP_003074088.1 ABC transporter substrate-binding protein -
  FOC71_RS00505 (FOC71_00505) - 101758..102441 (-) 684 WP_003074085.1 response regulator transcription factor -
  FOC71_RS00510 (FOC71_00510) - 102434..103747 (-) 1314 WP_003074083.1 sensor histidine kinase -
  FOC71_RS00515 (FOC71_00515) - 103747..104733 (-) 987 WP_003074080.1 sugar ABC transporter substrate-binding protein -
  FOC71_RS00520 (FOC71_00520) ssbB/cilA 104950..105345 (-) 396 WP_003074078.1 single-stranded DNA-binding protein Machinery gene
  FOC71_RS00525 (FOC71_00525) ytpR 105417..106043 (-) 627 WP_003074075.1 YtpR family tRNA-binding protein -
  FOC71_RS00530 (FOC71_00530) - 106060..106377 (-) 318 WP_003074074.1 thioredoxin family protein -
  FOC71_RS00535 (FOC71_00535) - 106374..106661 (-) 288 WP_003074072.1 DUF4651 domain-containing protein -
  FOC71_RS00540 (FOC71_00540) pepA 106781..107845 (+) 1065 WP_003074071.1 glutamyl aminopeptidase -
  FOC71_RS00545 (FOC71_00545) - 108136..108696 (-) 561 WP_003074069.1 folate family ECF transporter S component -
  FOC71_RS00550 (FOC71_00550) - 108878..110182 (-) 1305 WP_037584610.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.71 Da        Isoelectric Point: 5.3055

>NTDB_id=449978 FOC71_RS00520 WP_003074078.1 104950..105345(-) (ssbB/cilA) [Streptococcus intermedius strain FDAARGOS_769]
MYNKVILIGRLVNTPEVNKTANDKSVVRATLAINRRYKGQNGEREADFVNVVVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGEDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=449978 FOC71_RS00520 WP_003074078.1 104950..105345(-) (ssbB/cilA) [Streptococcus intermedius strain FDAARGOS_769]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTTAATACACCAGAGGTAAATAAAACAGCTAATGATAAATCTGTGGT
ACGTGCAACGCTTGCCATCAACCGTCGCTATAAAGGTCAAAATGGCGAACGAGAAGCAGATTTTGTAAATGTCGTTGTTT
GGGGAAAGTTAGCTGAAACCTTAGCAAGTTATGCAACAAAAGGAAGTTTAATATCTCTTGATGGAGAACTTCGCACCCGC
CGATATGAGAAAGACGGTGTGACACATTATGTAACGGAAGTGCTTTGCAATGGCTTCCAGCTATTAGAAAGTCGTGCCCA
ACGAGCGCTTCGTGAAAATAATACAGGCGAAGATTTAGCAGATTTGGTTTTGGAAGAAGAAGAGTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae Rx1

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae D39

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae R6

81.679

100

0.817
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382