Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABK1_RS17350 Genome accession   NC_017162
Coordinates   3609082..3609507 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii 1656-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3604082..3614507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK1_RS17320 (ABK1_3407) - 3604610..3605644 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  ABK1_RS17325 (ABK1_3408) - 3605759..3606700 (+) 942 WP_085916958.1 triacylglycerol lipase -
  ABK1_RS17330 (ABK1_3409) rplS 3606753..3607121 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABK1_RS17335 (ABK1_3410) trmD 3607330..3608070 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABK1_RS17340 (ABK1_3411) rimM 3608116..3608664 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  ABK1_RS17345 (ABK1_3412) rpsP 3608684..3608935 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABK1_RS17350 (ABK1_3413) pilE 3609082..3609507 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ABK1_RS17355 (ABK1_3414) pilY2 3609504..3609986 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ABK1_RS17360 (ABK1_3415) pilY1 3609999..3613853 (-) 3855 WP_000768968.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=44964 ABK1_RS17350 WP_000788342.1 3609082..3609507(-) (pilE) [Acinetobacter baumannii 1656-2]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=44964 ABK1_RS17350 WP_000788342.1 3609082..3609507(-) (pilE) [Acinetobacter baumannii 1656-2]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518

Multiple sequence alignment