Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABK1_RS17365 Genome accession   NC_017162
Coordinates   3613865..3614683 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii 1656-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3608865..3619683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK1_RS17350 (ABK1_3413) pilE 3609082..3609507 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ABK1_RS17355 (ABK1_3414) pilY2 3609504..3609986 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ABK1_RS17360 (ABK1_3415) pilY1 3609999..3613853 (-) 3855 WP_000768968.1 PilC/PilY family type IV pilus protein Machinery gene
  ABK1_RS17365 (ABK1_3416) pilX 3613865..3614683 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABK1_RS17370 (ABK1_3417) pilW 3614680..3615681 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABK1_RS17375 (ABK1_3418) pilV 3615682..3616242 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  ABK1_RS17380 (ABK1_3419) fimU 3616236..3616709 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABK1_RS17385 (ABK1_3420) ispH 3616879..3617829 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABK1_RS17390 (ABK1_3421) gmk 3617952..3618581 (+) 630 WP_000015937.1 guanylate kinase -
  ABK1_RS17395 (ABK1_3422) rpoZ 3618654..3618932 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABK1_RS20245 - 3618971..3619100 (+) 130 Protein_3423 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=44967 ABK1_RS17365 WP_000149374.1 3613865..3614683(-) (pilX) [Acinetobacter baumannii 1656-2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=44967 ABK1_RS17365 WP_000149374.1 3613865..3614683(-) (pilX) [Acinetobacter baumannii 1656-2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment