Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HQ399_RS20100 Genome accession   NZ_CP053881
Coordinates   4309064..4310305 (+) Length   413 a.a.
NCBI ID   WP_215802171.1    Uniprot ID   -
Organism   Aeromonas jandaei strain 4608     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4304064..4315305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ399_RS20075 (HQ399_20065) ampD 4304452..4305021 (-) 570 WP_042033204.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HQ399_RS20080 (HQ399_20070) - 4305144..4305614 (+) 471 WP_201912989.1 retropepsin-like aspartic protease -
  HQ399_RS20085 (HQ399_20075) nadC 4305618..4306475 (+) 858 WP_215802168.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HQ399_RS20090 (HQ399_20080) - 4306799..4307212 (+) 414 WP_215802170.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HQ399_RS20095 (HQ399_20085) pilB 4307213..4308919 (+) 1707 WP_041210692.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  HQ399_RS20100 (HQ399_20090) pilC 4309064..4310305 (+) 1242 WP_215802171.1 type II secretion system F family protein Machinery gene
  HQ399_RS20105 (HQ399_20095) pilD 4310368..4311240 (+) 873 WP_215802173.1 A24 family peptidase Machinery gene
  HQ399_RS20110 (HQ399_20100) coaE 4311258..4311866 (+) 609 WP_215802175.1 dephospho-CoA kinase -
  HQ399_RS20115 (HQ399_20105) zapD 4311911..4312633 (+) 723 WP_215802177.1 cell division protein ZapD -
  HQ399_RS20120 (HQ399_20110) yacG 4312643..4312837 (+) 195 WP_209297368.1 DNA gyrase inhibitor YacG -
  HQ399_RS20125 (HQ399_20115) mutT 4312898..4313311 (-) 414 WP_215802179.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45358.52 Da        Isoelectric Point: 9.6070

>NTDB_id=448372 HQ399_RS20100 WP_215802171.1 4309064..4310305(+) (pilC) [Aeromonas jandaei strain 4608]
MATLTKKTNAPKKVFAFRWQGVNRKGQKVSGELQAENIATVKAELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGEIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYVFFGGIA
LAIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=448372 HQ399_RS20100 WP_215802171.1 4309064..4310305(+) (pilC) [Aeromonas jandaei strain 4608]
ATGGCAACGCTGACCAAGAAAACCAATGCCCCCAAAAAAGTCTTCGCCTTTCGCTGGCAAGGGGTAAACCGCAAAGGACA
AAAAGTCTCTGGCGAGCTTCAAGCAGAGAACATAGCCACAGTGAAGGCAGAGCTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTTGCCAAGAAGAGTCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATTGCCATCGTATCGCGC
CAGATCACTACCATGCTCTCCGCCGGCGTTCCTCTGGTACAAAGCCTGCAAATCATCGCCCGCAGCCACGAAAAAGCATC
CATGCGCGAACTGATGGGAGAAATAGCCGCTGATGTGGAAACCGGCACCCCCATGTCGGAAGCACTGCGCCGTCATCCTC
TCTATTTCGATGACCTCTATTGCGATTTGGTTGAAGCTGGCGAGCAGTCCGGTGCACTGGAAACCATCTATGACCGCATC
GCCACCTACCGCGAGAAATCAGAAGCTCTCAAGTCGAAGATCAAAAAGGCAATGTTCTACCCAACCATGGTTATCCTAGT
TGCGATTGTCGTTACCTCCATCCTGTTGCTCTTCGTCATCCCGCAATTCGAAGATATCTTCAAAAGCTTCGGTGCCGAGC
TTCCTGCATTTACGCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTACGTTTTCTTCGGCGGAATCGCG
CTGGCCATCTTTCTCTATGTCCGTGCCTGGCGAGCCTCCCAGAAGGTAAAAGACAATACCGACAAGTTTGTGCTCACGAT
TCCGGTAGTCGGGATGATCCTGCACAAAGCTGCCATGGCCCGCTTTGCCCGCACCCTTTCGACCACCTTCTCGGCGGGGA
TTCCGCTGGTCGATGCCTTGGTTTCAGCTGCTGGTGCTTCCGGTAACTACGTCTATCGCACCGCAGTGATGGCCATTCGC
AACGAGGTAGTCGCCGGTATGCAGATTAACGTGGCGATGAGGACCGTCGATCTCTTCCCCGACATGGTGATTCAAATGGT
GATGATCGGCGAGGAGTCCGGCGCCATCGATGATATGCTTTCCAAGGTCGCCACCATCTTCGAACAGGAGGTCGACGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCTCTGATCATGGTGGTACTGGGGGTGCTGGTTGGCGGTATGGTTATCGCT
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.081

95.884

0.557
  pilC Acinetobacter baumannii D1279779

54.75

96.852

0.53
  pilC Acinetobacter baylyi ADP1

53.652

96.126

0.516
  pilC Legionella pneumophila strain ERS1305867

51.733

97.821

0.506
  pilC Vibrio campbellii strain DS40M4

46.324

98.789

0.458
  pilC Vibrio cholerae strain A1552

46.617

96.61

0.45
  pilG Neisseria meningitidis 44/76-A

40.741

98.063

0.4
  pilG Neisseria gonorrhoeae MS11

40.741

98.063

0.4
  pilC Thermus thermophilus HB27

38

96.852

0.368