Detailed information NTG0448373

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HQ399_RS20105
• Genome accession: NZ_CP053881
• Coordinates: 4310368..4311240 (+)
• Length: 290 a.a.
• NCBI ID: WP_215802173.1
• Uniprot ID: -
• Organism: Aeromonas jandaei strain 4608
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4305368..4316240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ399_RS20085 (HQ399_20075)	nadC	4305618..4306475 (+)	858	WP_215802168.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HQ399_RS20090 (HQ399_20080)	-	4306799..4307212 (+)	414	WP_215802170.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HQ399_RS20095 (HQ399_20085)	pilB	4307213..4308919 (+)	1707	WP_041210692.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HQ399_RS20100 (HQ399_20090)	pilC	4309064..4310305 (+)	1242	WP_215802171.1	type II secretion system F family protein	Machinery gene
HQ399_RS20105 (HQ399_20095)	pilD	4310368..4311240 (+)	873	WP_215802173.1	A24 family peptidase	Machinery gene
HQ399_RS20110 (HQ399_20100)	coaE	4311258..4311866 (+)	609	WP_215802175.1	dephospho-CoA kinase	-
HQ399_RS20115 (HQ399_20105)	zapD	4311911..4312633 (+)	723	WP_215802177.1	cell division protein ZapD	-
HQ399_RS20120 (HQ399_20110)	yacG	4312643..4312837 (+)	195	WP_209297368.1	DNA gyrase inhibitor YacG	-
HQ399_RS20125 (HQ399_20115)	mutT	4312898..4313311 (-)	414	WP_215802179.1	8-oxo-dGTP diphosphatase MutT	-
HQ399_RS20130 (HQ399_20120)	secA	4313386..4316106 (-)	2721	WP_215802181.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32165.55 Da
• Isoelectric Point: 6.2140

>NTDB_id=448373 HQ399_RS20105 WP_215802173.1 4310368..4311240(+) (pilD) [Aeromonas jandaei strain 4608]
MTLLLELAHGLPWLYFSLVFIFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFTPEEEQAPEPRYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGLCSECQAPISARYPLVELLTALLSVAVVMVISPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLIGGFAPLADAVIGAMAGYLVLWCLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAIIGISLIALRKHHQGNPIPFGPYLAIAGWIALLWGDTITRWYLTTIL

Nucleotide

• Length: 873 bp

>NTDB_id=448373 HQ399_RS20105 WP_215802173.1 4310368..4311240(+) (pilD) [Aeromonas jandaei strain 4608]
ATGACACTTCTTCTCGAGCTGGCTCACGGATTGCCCTGGCTCTACTTCTCGCTGGTTTTTATCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCATCGCTTGCCCATTATGTTGGAACGAGAATGGCAGGCTGAATATCGAGGCTACTTCA
CCCCCGAGGAAGAGCAAGCACCCGAACCGCGCTACAACCTGATGGTACCCCGCTCGGCCTGCCCCCATTGCGGCCATGCC
ATCACAGCACTGGAAAATATCCCGCTGTTGAGCTGGCTCTGGCTCAAGGGACTGTGTAGTGAGTGCCAAGCCCCTATTTC
GGCCCGCTATCCGCTGGTTGAACTGCTGACAGCGCTGCTCTCGGTGGCCGTAGTCATGGTGATTTCACCGGGTTGGGGTA
CCCTTGCAGCCCTGCTGCTGACCTGGGTATTGGTGGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCAGACCAG
CTGACCCTGCCGCTGCTGTGGGGCGGTTTGCTGTTCAACCTGATCGGTGGTTTTGCACCGCTTGCTGATGCTGTGATCGG
CGCCATGGCAGGATATCTGGTGCTCTGGTGCCTCTACTGGGCTTTCAAACTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGTTGCTGGCGGCACTCGGAGCTTGGCTCGGTTGGCAGGCACTGCCGATCATACTGCTGCTCTCATCTTTG
GTTGGTGCCATCATCGGCATCTCGCTCATTGCCCTGCGCAAACACCATCAGGGCAACCCCATCCCCTTTGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCACCACCATCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.111	99.31	0.607
pilD	Vibrio campbellii strain DS40M4	55.903	99.31	0.555
pilD	Acinetobacter baumannii D1279779	53.957	95.862	0.517
pilD	Acinetobacter nosocomialis M2	53.957	95.862	0.517
pilD	Neisseria gonorrhoeae MS11	48.352	94.138	0.455