Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HPY08_RS02325 Genome accession   NZ_CP053808
Coordinates   484410..485636 (-) Length   408 a.a.
NCBI ID   WP_000648510.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479410..490636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS02300 (HPY08_02305) parC 479411..481696 (+) 2286 WP_000102510.1 DNA topoisomerase IV subunit A -
  HPY08_RS02305 (HPY08_02310) yacG 481745..481942 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY08_RS02310 (HPY08_02315) zapD 482100..482840 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY08_RS02315 (HPY08_02320) coaE 482872..483480 (-) 609 WP_162797106.1 dephospho-CoA kinase -
  HPY08_RS02320 (HPY08_02325) pilD 483477..484352 (-) 876 WP_114716880.1 A24 family peptidase Machinery gene
  HPY08_RS02325 (HPY08_02330) pilC 484410..485636 (-) 1227 WP_000648510.1 type II secretion system F family protein Machinery gene
  HPY08_RS02330 (HPY08_02335) pilB 485679..487367 (-) 1689 WP_001960917.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY08_RS02335 (HPY08_02340) pilA 487374..487850 (-) 477 WP_095473243.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HPY08_RS02340 (HPY08_02345) nadC 488095..488985 (-) 891 WP_114716881.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPY08_RS02345 (HPY08_02350) ampD 489283..489828 (+) 546 WP_001959072.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HPY08_RS02350 (HPY08_02355) fldB 489998..490516 (-) 519 WP_000690112.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45120.41 Da        Isoelectric Point: 10.3424

>NTDB_id=447644 HPY08_RS02325 WP_000648510.1 484410..485636(-) (pilC) [Vibrio cholerae strain SP7G]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=447644 HPY08_RS02325 WP_000648510.1 484410..485636(-) (pilC) [Vibrio cholerae strain SP7G]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTCTCTTTATTGGCGCGCCTAACCCATCGAGTGAAAAGCAAAGACATCACGATTTTGACTCGGCAGTTAGCGACCATG
CTCACCACGGGCGTACCGATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCGGGCACGCCGCTTTCCAAGGCGATGCGCACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTCGAAACCGGAGAGATGTCCGGTAACTTACCTGAGGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAGCAGCTACGCGCCAAGGTGATCAAAGCGCTCATCTACCCGAGTATGGTAGTGTTGGTCGCGCTCGGAGTTTC
CTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCAGAACTGCCTTGGTTTACGC
AGCAAGTACTGAAACTCTCACACTGGGTGCAGGCTTACAGTTTATGGGCATTTATCGCTATCGCAGCAGCCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCCTTCCAAATCCGTTTAAAAACCAGCCGCTTGGGGCTGAAATTTCCGATTATTGGCAA
TGTACTCGCCAAAGCGTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCAATTCTCGCCA
GTTTAAAAACCACGGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCTGCG
GGTATGCCGATGTATATTGCCATGCGCAATACCGACGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGATGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAACCATTGATCATCGTCTTTCTTGGGACGGTCGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.755

100

0.998
  pilC Vibrio campbellii strain DS40M4

73.75

98.039

0.723
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

42.015

99.755

0.419
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.172

97.059

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4