Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HPY07_RS02330 Genome accession   NZ_CP053806
Coordinates   486578..487804 (-) Length   408 a.a.
NCBI ID   WP_114774363.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP6G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 481578..492804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS02305 (HPY07_02305) parC 481579..483864 (+) 2286 WP_175241854.1 DNA topoisomerase IV subunit A -
  HPY07_RS02310 (HPY07_02310) yacG 483913..484110 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY07_RS02315 (HPY07_02315) zapD 484268..485008 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY07_RS02320 (HPY07_02320) coaE 485040..485648 (-) 609 WP_057554975.1 dephospho-CoA kinase -
  HPY07_RS02325 (HPY07_02325) pilD 485645..486520 (-) 876 WP_071170712.1 A24 family peptidase Machinery gene
  HPY07_RS02330 (HPY07_02330) pilC 486578..487804 (-) 1227 WP_114774363.1 type II secretion system F family protein Machinery gene
  HPY07_RS02335 (HPY07_02335) pilB 487847..489535 (-) 1689 WP_175241855.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY07_RS02340 (HPY07_02340) pilA 489538..489990 (-) 453 WP_111673800.1 pilin Machinery gene
  HPY07_RS02345 (HPY07_02345) nadC 490235..491125 (-) 891 WP_175241856.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPY07_RS02350 (HPY07_02350) ampD 491423..491968 (+) 546 WP_001959072.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45110.37 Da        Isoelectric Point: 10.3424

>NTDB_id=447596 HPY07_RS02330 WP_114774363.1 486578..487804(-) (pilC) [Vibrio cholerae strain SP6G]
MKATQTLSLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=447596 HPY07_RS02330 WP_114774363.1 486578..487804(-) (pilC) [Vibrio cholerae strain SP6G]
ATGAAAGCGACCCAAACCTTATCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAACTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTCTCTTTATTGGCACGCCTAACCCATCGCGTGAAAAGTAAAGATATTACGATTTTGACTCGGCAGTTGGCGACCATG
CTCACAACGGGCGTACCGATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGTGTGGAAGCGGGCACGCCGCTTTCCAAGGCGATGCGCACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTGGAAACCGGAGAGATGTCCGGTAACTTACCTGAAGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAGCAGCTACGCGCCAAGGTGATCAAAGCGCTCATCTACCCCAGCATGGTGGTGTTGGTCGCGCTCGGAGTTTC
CTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCTGAACTGCCTTGGTTTACGC
AGCAAGTGCTGAAACTCTCACACTGGGTGCAGGCTTACAGTTTATGGGCATTTATCGCCATCGCAGCAGCCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCCTTCCAGATCCGGTTGAAAACCAGTCGCTTGGGGCTGAAATTTCCGATTATTGGCAA
TGTACTCGCCAAAGCGTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCAATTCTCGCCA
GTTTAAAAACCACCGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCTGCG
GGTATGCCGATGTACATTGCCATGCGCAATACCGACGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGATGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAACCACTGATCATCGTCTTTCTTGGGACGGTCGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.51

100

0.995
  pilC Vibrio campbellii strain DS40M4

73.75

98.039

0.723
  pilC Acinetobacter baumannii D1279779

42.75

98.039

0.419
  pilC Acinetobacter baylyi ADP1

41.667

100

0.417
  pilC Pseudomonas stutzeri DSM 10701

42.04

98.529

0.414
  pilC Legionella pneumophila strain ERS1305867

42.065

97.304

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4