Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HPY07_RS02325 Genome accession   NZ_CP053806
Coordinates   485645..486520 (-) Length   291 a.a.
NCBI ID   WP_071170712.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP6G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 480645..491520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS02305 (HPY07_02305) parC 481579..483864 (+) 2286 WP_175241854.1 DNA topoisomerase IV subunit A -
  HPY07_RS02310 (HPY07_02310) yacG 483913..484110 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY07_RS02315 (HPY07_02315) zapD 484268..485008 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY07_RS02320 (HPY07_02320) coaE 485040..485648 (-) 609 WP_057554975.1 dephospho-CoA kinase -
  HPY07_RS02325 (HPY07_02325) pilD 485645..486520 (-) 876 WP_071170712.1 A24 family peptidase Machinery gene
  HPY07_RS02330 (HPY07_02330) pilC 486578..487804 (-) 1227 WP_114774363.1 type II secretion system F family protein Machinery gene
  HPY07_RS02335 (HPY07_02335) pilB 487847..489535 (-) 1689 WP_175241855.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY07_RS02340 (HPY07_02340) pilA 489538..489990 (-) 453 WP_111673800.1 pilin Machinery gene
  HPY07_RS02345 (HPY07_02345) nadC 490235..491125 (-) 891 WP_175241856.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32376.64 Da        Isoelectric Point: 6.6819

>NTDB_id=447595 HPY07_RS02325 WP_071170712.1 485645..486520(-) (pilD) [Vibrio cholerae strain SP6G]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVIGV
IFGLIQLCQQKKGIDIAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=447595 HPY07_RS02325 WP_071170712.1 485645..486520(-) (pilD) [Vibrio cholerae strain SP6G]
ATGGAACTGTTTTATTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGTAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACACCGATTCGCGTCATT
GATAATATCCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGCTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTAATTGCCACTCACTTTCCGTTCGGAGTTTTTGCCGTGGCGCTGC
TGTTTTTCAGCTATGTGTTGATTGCGGCAACCTTCATCGACTTCGATACCCTGTTGTTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCTGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCGATTTACTGGCTATTTAAACTGCTGACTGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCACTCGGCGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGATCGGGGTG
ATTTTCGGTTTAATCCAACTGTGCCAGCAGAAAAAAGGTATCGATATAGCCTTTCCGTTTGGCCCTTATCTCGCCATAGC
GGGGTGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGCTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

98.969

100

0.99
  pilD Vibrio campbellii strain DS40M4

74.653

98.969

0.739
  pilD Acinetobacter nosocomialis M2

53.676

93.471

0.502
  pilD Acinetobacter baumannii D1279779

53.309

93.471

0.498
  pilD Neisseria gonorrhoeae MS11

45.139

98.969

0.447