Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HPY12_RS02335 Genome accession   NZ_CP053794
Coordinates   482991..484217 (-) Length   408 a.a.
NCBI ID   WP_000648510.1    Uniprot ID   -
Organism   Vibrio cholerae strain W10G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477991..489217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY12_RS02315 (HPY12_02315) yacG 480326..480523 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY12_RS02320 (HPY12_02320) zapD 480681..481421 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY12_RS02325 (HPY12_02325) coaE 481453..482061 (-) 609 WP_057567633.1 dephospho-CoA kinase -
  HPY12_RS02330 (HPY12_02330) pilD 482058..482933 (-) 876 WP_057567632.1 A24 family peptidase Machinery gene
  HPY12_RS02335 (HPY12_02335) pilC 482991..484217 (-) 1227 WP_000648510.1 type II secretion system F family protein Machinery gene
  HPY12_RS02340 (HPY12_02340) pilB 484260..485948 (-) 1689 WP_057567631.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY12_RS02345 (HPY12_02345) pilA 485955..486374 (-) 420 WP_057567630.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HPY12_RS02350 (HPY12_02350) nadC 486619..487509 (-) 891 WP_000665274.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPY12_RS02355 (HPY12_02355) ampD 487807..488352 (+) 546 WP_057567629.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HPY12_RS02360 (HPY12_02360) fldB 488473..488991 (-) 519 WP_000690112.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45120.41 Da        Isoelectric Point: 10.3424

>NTDB_id=447314 HPY12_RS02335 WP_000648510.1 482991..484217(-) (pilC) [Vibrio cholerae strain W10G]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=447314 HPY12_RS02335 WP_000648510.1 482991..484217(-) (pilC) [Vibrio cholerae strain W10G]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATATCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTGAAAAAAGGCA
GTGTATCTCTCTTGGCTCGCCTAACCCATCGCGTGAAAAGTAAAGATATTACGATTTTGACTCGGCAGCTGGCGACCATG
CTCACCACGGGCGTACCCATTGTGCAAGCTCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCCATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCGGGCACACCGCTTTCCAAAGCGATGCGCACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTGGAAACCGGAGAGATGTCCGGTAACTTACCTGAGGTGTTTGAGCGTTTGGCCACTTACCGCGAG
AAAAGCGAACAGCTACGCGCCAAGGTGATCAAAGCGCTCATCTACCCCAGCATGGTGGTGTTGGTTGCGCTCGGAGTTTC
CTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCTGAACTGCCTTGGTTTACGC
AGCAAGTGCTGAAACTCTCACACTGGGTGCAGGCTTACAGTTTATGGGCATTTATCGCCATCGCAGCAGCCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCCTTCCAGATCCGTTTAAAAACCAGCCGCTTAGGGCTGAAATTTCCGATTATTGGCAA
TGTACTCGCCAAAGCGTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCGATCCTCGCCA
GTTTAAAAACCACCGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCTGCG
GGTATGCCGATGTACATTGCCATGCGCAATACCGACGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCAGGGCAATTAGATGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAACCACTGATCATCGTCTTTCTTGGGACGGTTGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.755

100

0.998
  pilC Vibrio campbellii strain DS40M4

73.75

98.039

0.723
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

42.015

99.755

0.419
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.172

97.059

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4