Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HPY12_RS02330 Genome accession   NZ_CP053794
Coordinates   482058..482933 (-) Length   291 a.a.
NCBI ID   WP_057567632.1    Uniprot ID   -
Organism   Vibrio cholerae strain W10G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477058..487933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY12_RS02310 (HPY12_02310) parC 477755..480040 (+) 2286 WP_000102510.1 DNA topoisomerase IV subunit A -
  HPY12_RS02315 (HPY12_02315) yacG 480326..480523 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY12_RS02320 (HPY12_02320) zapD 480681..481421 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY12_RS02325 (HPY12_02325) coaE 481453..482061 (-) 609 WP_057567633.1 dephospho-CoA kinase -
  HPY12_RS02330 (HPY12_02330) pilD 482058..482933 (-) 876 WP_057567632.1 A24 family peptidase Machinery gene
  HPY12_RS02335 (HPY12_02335) pilC 482991..484217 (-) 1227 WP_000648510.1 type II secretion system F family protein Machinery gene
  HPY12_RS02340 (HPY12_02340) pilB 484260..485948 (-) 1689 WP_057567631.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY12_RS02345 (HPY12_02345) pilA 485955..486374 (-) 420 WP_057567630.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HPY12_RS02350 (HPY12_02350) nadC 486619..487509 (-) 891 WP_000665274.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32449.69 Da        Isoelectric Point: 7.1618

>NTDB_id=447313 HPY12_RS02330 WP_057567632.1 482058..482933(-) (pilD) [Vibrio cholerae strain W10G]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFSLLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=447313 HPY12_RS02330 WP_057567632.1 482058..482933(-) (pilD) [Vibrio cholerae strain W10G]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCTACCCTGTTTGGCTTGATTGTCGGTAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACACCGATTCGCGTGATT
GATAATATCCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGTGCTCGCTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTAATTGCCACTCACTTTCCGTTCGGGGTGTTTGCCGTGGCGCTGC
TGTTTTTCAGCTATGTATTGATTGCGGCGACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCACTGGCACTGCTTGGCTTTTCTCCGGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGC
GGGCTATCTCTCGCTGTGGTCGATTTACTGGCTATTTAAACTGCTGACAGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGTGCTTGGCTGGGTTGGCAGCAGCTGCCTGTCATCGTACTGCTCTCATCGGTGGTCGGGGTG
ATTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGTATTGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGGTGGTTTTCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGCTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.656

100

0.997
  pilD Vibrio campbellii strain DS40M4

75.694

98.969

0.749
  pilD Acinetobacter nosocomialis M2

53.309

93.471

0.498
  pilD Acinetobacter baumannii D1279779

52.941

93.471

0.495
  pilD Neisseria gonorrhoeae MS11

44.792

98.969

0.443