Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GE023_RS00910 Genome accession   NZ_CP053789
Coordinates   144083..144478 (+) Length   131 a.a.
NCBI ID   WP_003046216.1    Uniprot ID   A0A2D4DQK2
Organism   Streptococcus canis strain HL_98_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 145115..145579 144083..144478 flank 637


Gene organization within MGE regions


Location: 144083..145579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS00910 (GE023_000910) ssbB 144083..144478 (+) 396 WP_003046216.1 single-stranded DNA-binding protein Machinery gene
  GE023_RS00915 (GE023_000915) tnpA 145115..145579 (+) 465 Protein_134 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14819.03 Da        Isoelectric Point: 7.1668

>NTDB_id=447143 GE023_RS00910 WP_003046216.1 144083..144478(+) (ssbB) [Streptococcus canis strain HL_98_2]
MYNKVIMIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVASDLVDLVLEEEDLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=447143 GE023_RS00910 WP_003046216.1 144083..144478(+) (ssbB) [Streptococcus canis strain HL_98_2]
ATGTATAATAAAGTAATCATGATTGGTCGTTTGGTGGCTAAACCTGAATTGGTAAAAACAGCTACGGATAAGCATGTGGC
GCGTCTATCTTTGGCTGTTAATCGGAGGTTCAAGAATGCTTCAGGAGAGCGAGAAGCTGATTTTATTTCTGTTGTTGTCT
GGGGAAAGTTGGCAGAAACTCTGGTTTCTTATGCCAGTAAAGGTAGTTTGATGTCTATTGATGGCGAGCTTAGAACCCGC
AAATATGATAAAGATGGGCAAGTGCATTATGTGACGGAAGTGCTATGTCAGTCCTTTCAGTTATTAGAAAGTCGTGCTCA
GCGTGCAATGCGAGAAAATAATGTGGCCAGTGACTTGGTGGATTTGGTCTTGGAAGAGGAGGACTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D4DQK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

61.207

88.55

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.61

90.076

0.42
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397