Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HPQ66_RS07110 Genome accession   NZ_CP053764
Coordinates   1399303..1399587 (+) Length   94 a.a.
NCBI ID   WP_070081755.1    Uniprot ID   -
Organism   Bacillus velezensis strain B268     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1394303..1404587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS07090 (HPQ66_07110) - 1395550..1396458 (+) 909 WP_172614654.1 ketopantoate reductase family protein -
  HPQ66_RS07095 (HPQ66_07115) - 1396488..1397720 (-) 1233 WP_146283567.1 aminopeptidase -
  HPQ66_RS07100 (HPQ66_07120) - 1397821..1397955 (-) 135 WP_003154559.1 protein YkpC -
  HPQ66_RS07105 (HPQ66_07125) mreBH 1398027..1399034 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  HPQ66_RS07110 (HPQ66_07130) abrB 1399303..1399587 (+) 285 WP_070081755.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HPQ66_RS07115 (HPQ66_07135) - 1399760..1401064 (+) 1305 WP_014304932.1 ATP-binding protein -
  HPQ66_RS07120 (HPQ66_07140) - 1401066..1401893 (+) 828 WP_077722153.1 gamma-glutamylcyclotransferase -
  HPQ66_RS07125 (HPQ66_07145) ktrC 1401934..1402599 (+) 666 WP_172614655.1 Ktr system potassium transporter KtrC -
  HPQ66_RS07130 (HPQ66_07150) ade 1402748..1404481 (+) 1734 WP_172614656.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10573.47 Da        Isoelectric Point: 6.9830

>NTDB_id=446979 HPQ66_RS07110 WP_070081755.1 1399303..1399587(+) (abrB) [Bacillus velezensis strain B268]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIKEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=446979 HPQ66_RS07110 WP_070081755.1 1399303..1399587(+) (abrB) [Bacillus velezensis strain B268]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCATGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCAAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543