Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HQN78_RS16235 Genome accession   NZ_CP053750
Coordinates   3497095..3498174 (+) Length   359 a.a.
NCBI ID   WP_235084897.1    Uniprot ID   -
Organism   Chromobacterium sp. Beijing     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3492095..3503174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN78_RS16210 (HQN78_16045) rsmB 3492214..3493464 (-) 1251 WP_235084889.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HQN78_RS16215 (HQN78_16050) htpX 3493560..3494417 (-) 858 WP_227106518.1 zinc metalloprotease HtpX -
  HQN78_RS16220 (HQN78_16055) fmt 3494453..3495373 (-) 921 WP_235084891.1 methionyl-tRNA formyltransferase -
  HQN78_RS16225 (HQN78_16060) def 3495411..3495914 (-) 504 WP_107797869.1 peptide deformylase -
  HQN78_RS16230 (HQN78_16065) - 3496064..3497098 (+) 1035 WP_235084894.1 LysM peptidoglycan-binding domain-containing protein -
  HQN78_RS16235 (HQN78_16070) dprA 3497095..3498174 (+) 1080 WP_235084897.1 DNA-processing protein DprA Machinery gene
  HQN78_RS16240 (HQN78_16075) - 3498209..3498667 (+) 459 WP_048413521.1 DUF494 family protein -
  HQN78_RS16245 (HQN78_16080) topA 3498933..3501233 (+) 2301 WP_235084899.1 type I DNA topoisomerase -
  HQN78_RS16250 (HQN78_16085) - 3501302..3502588 (-) 1287 WP_235084902.1 hypothetical protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 37796.25 Da        Isoelectric Point: 6.2348

>NTDB_id=446917 HQN78_RS16235 WP_235084897.1 3497095..3498174(+) (dprA) [Chromobacterium sp. Beijing]
MKAPPHDWLLLALTPGIGPAGFLRLIDAFGGADAALNANSRQTEPLIGKEAAEALQRREAAASAEAALEWAQTPGCQLLS
LLDDDYPPQLAESNSPPPLLFARGRRELLTQPMLAIVGSRAATPQGRQNAESFSRELAEHGYCIVSGLASGIDAAAHHGA
LGQQPSTIAVVGTGIDRVYPASNRQLAHRIAEEGLILSEFALGMGPLAGHFPRRNRIIAGLSRGCLVAEANIGSGSLITA
RLAMENNREVMAIPGSIHNPQSRGCHRLIKDGAKLVETVDDVLDEVGRLQRKRPSAKPAAPAAESPLLEAMGFDPISMDA
LSTTLGLTVGELYAMLLELELAGLVASHPGGLFQRLKPG

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=446917 HQN78_RS16235 WP_235084897.1 3497095..3498174(+) (dprA) [Chromobacterium sp. Beijing]
ATGAAGGCTCCGCCGCATGACTGGCTGTTGCTGGCACTGACCCCCGGCATCGGCCCGGCCGGCTTTTTACGGCTGATCGA
CGCCTTCGGCGGCGCCGACGCCGCCTTGAACGCCAACAGCCGCCAGACCGAACCCTTGATCGGCAAAGAAGCGGCCGAAG
CCCTGCAGCGGCGCGAGGCCGCCGCCTCCGCCGAGGCGGCGCTGGAATGGGCGCAAACGCCGGGCTGCCAATTGCTGTCG
CTGCTGGACGACGACTACCCGCCGCAGCTGGCCGAATCCAACTCGCCGCCGCCGCTGCTGTTCGCCCGCGGCCGGCGCGA
GCTGCTGACCCAGCCCATGCTCGCCATCGTGGGCAGCCGCGCCGCCACGCCGCAGGGCAGACAGAACGCGGAAAGCTTTT
CCCGCGAACTGGCCGAACACGGCTATTGCATCGTCAGCGGCCTGGCCAGCGGCATCGACGCCGCCGCCCACCACGGCGCG
CTCGGACAGCAGCCCTCCACCATCGCCGTGGTCGGCACCGGCATAGACCGCGTCTACCCGGCCAGCAACCGCCAGCTGGC
GCACCGCATCGCCGAGGAAGGCCTGATCCTGTCCGAGTTCGCGCTGGGCATGGGACCGCTGGCCGGCCATTTCCCGCGCC
GCAACCGCATCATCGCCGGCCTCAGCCGCGGCTGTCTGGTGGCGGAGGCCAATATCGGCTCCGGCTCGCTGATCACCGCG
CGGCTGGCGATGGAGAACAACCGCGAAGTGATGGCCATCCCCGGTTCCATCCACAATCCGCAGTCTCGCGGCTGTCACCG
GCTAATCAAGGACGGCGCCAAACTGGTGGAAACCGTGGACGACGTGCTGGACGAAGTGGGCAGGCTGCAACGCAAACGCC
CCAGCGCCAAGCCGGCGGCCCCCGCGGCGGAATCGCCGCTGCTTGAAGCCATGGGATTCGACCCCATCAGTATGGATGCG
CTTTCGACCACGCTCGGGTTGACTGTGGGGGAGCTTTACGCGATGCTGCTCGAACTTGAGCTGGCCGGCCTGGTGGCCAG
CCATCCCGGCGGGCTTTTTCAGCGCCTGAAACCGGGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(292-351)

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

50.259

100

0.54
  dprA Neisseria meningitidis strain C311

49.742

100

0.538
  dprA Neisseria meningitidis MC58

49.742

100

0.538
  dprA Neisseria gonorrhoeae strain FA1090

49.741

100

0.535
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.496

100

0.409
  dprA Vibrio campbellii strain DS40M4

40.669

100

0.407
  dprA Legionella pneumophila strain ERS1305867

50

80.78

0.404
  dprA Glaesserella parasuis strain SC1401

44.516

86.351

0.384
  dprA Acinetobacter baylyi ADP1

38.592

98.886

0.382
  dprA Vibrio cholerae strain A1552

42.947

88.858

0.382
  dprA Acinetobacter baumannii D1279779

37.853

98.607

0.373
  dprA Acinetobacter baumannii strain A118

37.571

98.607

0.37