Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HPK20_RS00215 Genome accession   NZ_CP053664
Coordinates   47749..48864 (+) Length   371 a.a.
NCBI ID   WP_171934044.1    Uniprot ID   -
Organism   Vibrio fluvialis strain A8     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 42749..53864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS00195 (HPK20_00195) rsmB 43682..44962 (-) 1281 WP_171933203.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HPK20_RS00200 (HPK20_00200) fmt 45013..45960 (-) 948 WP_171933204.1 methionyl-tRNA formyltransferase -
  HPK20_RS00205 (HPK20_00205) def 45979..46491 (-) 513 WP_020332568.1 peptide deformylase -
  HPK20_RS00210 (HPK20_00210) - 46631..47749 (+) 1119 WP_171933205.1 LysM peptidoglycan-binding domain-containing protein -
  HPK20_RS00215 (HPK20_00215) dprA 47749..48864 (+) 1116 WP_171934044.1 DNA-processing protein DprA Machinery gene
  HPK20_RS00220 (HPK20_00220) - 48867..49343 (+) 477 WP_020332565.1 DUF494 family protein -
  HPK20_RS00225 (HPK20_00225) - 49374..49961 (+) 588 WP_020332564.1 type I DNA topoisomerase -
  HPK20_RS00230 (HPK20_00230) - 49995..51128 (-) 1134 WP_171933206.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  HPK20_RS00235 (HPK20_00235) purE 51132..51617 (-) 486 WP_020332562.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  HPK20_RS00240 (HPK20_00240) - 51815..52372 (+) 558 WP_154183775.1 L-threonylcarbamoyladenylate synthase -
  HPK20_RS00245 (HPK20_00245) hemF 52392..53306 (+) 915 WP_020332560.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40544.01 Da        Isoelectric Point: 6.2302

>NTDB_id=446108 HPK20_RS00215 WP_171934044.1 47749..48864(+) (dprA) [Vibrio fluvialis strain A8]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSEQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFATQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=446108 HPK20_RS00215 WP_171934044.1 47749..48864(+) (dprA) [Vibrio fluvialis strain A8]
ATGCTCGAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACATTGCAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGACTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGAGCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTATTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATTGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATTGCTCATCAGT
TTGCCACGCAATTGGTCGAACACGGTTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCACATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGGCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGACGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGCTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.69

100

0.647
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

47.074

100

0.477
  dprA Legionella pneumophila strain ERS1305867

43.407

98.113

0.426
  dprA Neisseria meningitidis strain C311

37.688

100

0.404
  dprA Neisseria meningitidis MC58

37.688

100

0.404
  dprA Haemophilus influenzae Rd KW20

44.012

90.027

0.396
  dprA Neisseria gonorrhoeae MS11

36.181

100

0.388
  dprA Acinetobacter baumannii D1279779

42.216

90.027

0.38
  dprA Neisseria gonorrhoeae strain FA1090

35.696

100

0.38
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377