Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HOO69_RS00780 Genome accession   NZ_CP053541
Coordinates   141313..142536 (-) Length   407 a.a.
NCBI ID   WP_171801082.1    Uniprot ID   A0AAE7ASC9
Organism   Vibrio europaeus strain NPI-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136313..147536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS00740 (HOO69_00745) rpsP 136405..136653 (+) 249 WP_004742593.1 30S ribosomal protein S16 -
  HOO69_RS00745 (HOO69_00750) rimM 136683..137231 (+) 549 WP_069667597.1 ribosome maturation factor RimM -
  HOO69_RS00750 (HOO69_00755) trmD 137259..138002 (+) 744 WP_171801080.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HOO69_RS00755 (HOO69_00760) rplS 138044..138397 (+) 354 WP_004742596.1 50S ribosomal protein L19 -
  HOO69_RS00760 (HOO69_00765) yacG 138744..138938 (-) 195 WP_069667595.1 DNA gyrase inhibitor YacG -
  HOO69_RS00765 (HOO69_00770) zapD 139001..139741 (-) 741 WP_004742598.1 cell division protein ZapD -
  HOO69_RS00770 (HOO69_00775) coaE 139776..140384 (-) 609 WP_069667594.1 dephospho-CoA kinase -
  HOO69_RS00775 (HOO69_00780) pilD 140386..141255 (-) 870 WP_171801081.1 A24 family peptidase Machinery gene
  HOO69_RS00780 (HOO69_00785) pilC 141313..142536 (-) 1224 WP_171801082.1 type II secretion system F family protein Machinery gene
  HOO69_RS00785 (HOO69_00790) pilB 142547..144238 (-) 1692 WP_171801083.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HOO69_RS00790 (HOO69_00795) pilA 144244..144678 (-) 435 WP_069667590.1 pilin Machinery gene
  HOO69_RS00795 (HOO69_00800) nadC 144921..145808 (-) 888 WP_069667589.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HOO69_RS00800 (HOO69_00805) ampD 145940..146494 (+) 555 WP_171801084.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HOO69_RS00805 (HOO69_00810) fldB 146772..147293 (-) 522 WP_171801085.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44912.19 Da        Isoelectric Point: 10.3713

>NTDB_id=445039 HOO69_RS00780 WP_171801082.1 141313..142536(-) (pilC) [Vibrio europaeus strain NPI-1]
MKATSHQLKQYRWKGVNQRGKLVSGSTLALSDNEVKGKLSEQSIRVKSLRRKSLSLVTRLTQRVKKKDITLLTRQLSTML
ATGVPLIQALKLITLNHPKAEMRSILSYISKEVESGNPLSQSLGTASPLFDSLYTDLVATGEQSGNLAEVLQRIADYREK
SQRLNAKVTKALIYPTMVMTTAFAVTYLMLTMVIPQFEAMFAGFGAELPWLTQQVLALSAWLQTYSGASLIGLMLMLGVI
KLGLTKSYRLQLLFSRALLKIPLLGNILTKAAIAKFSRTLATSFNAGIPILEGIRASAKTVRNQHYHQAIKTAMLDVTAG
MPLYLSLRNSDCFPEMVLQMIMIGEESGRLGEMLHKIADVYEFEIDNTVDNLGKIIEPAIIIFLGIVVGGLIVAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=445039 HOO69_RS00780 WP_171801082.1 141313..142536(-) (pilC) [Vibrio europaeus strain NPI-1]
ATGAAAGCAACATCTCATCAGCTCAAACAGTATCGCTGGAAGGGGGTTAACCAGCGAGGAAAGCTCGTTTCTGGCTCTAC
GCTCGCCTTAAGTGACAACGAAGTAAAAGGTAAGCTGAGTGAACAATCGATCCGTGTTAAATCTCTAAGAAGAAAGTCAC
TGTCTCTCGTTACTCGCCTAACACAAAGAGTCAAAAAGAAAGACATCACTCTACTCACGAGGCAGCTGAGCACTATGCTC
GCGACTGGAGTGCCACTGATTCAAGCATTGAAGCTTATTACTCTTAACCACCCCAAAGCTGAGATGAGATCGATCTTAAG
CTACATAAGCAAGGAGGTAGAATCAGGAAACCCGCTATCTCAGAGCTTAGGCACCGCTAGCCCACTATTCGATAGCCTTT
ATACCGACCTCGTTGCCACTGGAGAGCAGTCTGGCAACTTAGCGGAAGTACTCCAACGTATTGCTGACTATCGGGAAAAA
TCGCAACGACTTAACGCCAAGGTAACCAAAGCGCTCATCTATCCCACTATGGTGATGACCACGGCTTTCGCAGTTACCTA
TCTCATGCTAACAATGGTGATACCTCAATTTGAAGCGATGTTTGCAGGCTTTGGTGCTGAGCTTCCTTGGCTTACCCAAC
AAGTGCTGGCCTTATCCGCTTGGCTACAAACCTATTCGGGAGCTAGCTTAATTGGTTTGATGCTGATGTTAGGGGTCATT
AAGCTCGGTTTAACAAAATCATACCGACTTCAATTACTGTTTAGTCGTGCCCTACTCAAGATCCCGCTTCTCGGCAACAT
CTTGACTAAAGCGGCAATTGCTAAATTTAGCCGAACACTTGCCACTAGCTTTAACGCCGGAATCCCAATTCTAGAAGGTA
TAAGAGCCTCCGCTAAAACGGTTCGTAACCAGCATTATCATCAAGCAATCAAAACGGCTATGCTTGATGTCACTGCAGGT
ATGCCGCTGTATCTTTCACTGCGCAACTCTGACTGTTTTCCCGAAATGGTTTTGCAGATGATAATGATAGGTGAAGAGTC
AGGACGACTCGGAGAAATGCTACACAAAATTGCCGATGTATATGAATTTGAAATCGATAACACGGTTGATAACCTTGGTA
AGATCATAGAGCCCGCGATTATCATCTTTCTAGGTATTGTTGTCGGTGGTCTGATTGTCGCAATGTATTTACCTATCTTT
AATTTGATGAGTGTCTTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

62.5

100

0.627
  pilC Vibrio campbellii strain DS40M4

59.024

100

0.595
  pilC Pseudomonas stutzeri DSM 10701

41.414

97.297

0.403
  pilC Acinetobacter baylyi ADP1

39.454

99.017

0.391
  pilC Legionella pneumophila strain ERS1305867

38.142

100

0.383
  pilC Acinetobacter baumannii D1279779

37.717

99.017

0.373
  pilG Neisseria gonorrhoeae MS11

39.276

95.086

0.373
  pilG Neisseria meningitidis 44/76-A

39.018

95.086

0.371